BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924268
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29605.1 | Symbols: | Plant protein 1589 of unknown functio... 250 1e-65
AT3G45800.1 | Symbols: | Plant protein 1589 of unknown functio... 152 3e-36
AT1G49700.1 | Symbols: | Plant protein 1589 of unknown functio... 62.1 6e-09
> AT2G29605.1 | Symbols: | Plant protein 1589 of unknown function
| chr2:12657909-12660087 REVERSE LENGTH=1206
Length=1206
Score = 250 bits (135), Expect = 1e-65
Identities = 277/340 (81%), Gaps = 32/340 (9%)
Strand=Plus/Plus
Query 21 ATGAGCGATCCATATCGTCACAATCTTCTCTGCAGCTGC-A--GTCGTAATATTTCACAG 77
|||||||| |||| ||||| ||||||||||||||||||| | ||||||| ||||| ||
Sbjct 1 ATGAGCGAACCATGTCGTCTCAATCTTCTCTGCAGCTGCAATCGTCGTAACGTTTCAGAG 60
Query 78 ACCATAGACACTATAAAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAA 137
|||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||
Sbjct 61 ACCATAGACACTATAAAGAACATAATCGCGACATGTATCCGCAAGTACATGAGTCTGGAA 120
Query 138 GAAACGGTGATAT-ATCTGCATGACAATCACAATATTAGTCATCATCTCACCAAACCAA- 195
||||| |||| || || |||| || |||||||| |||||||| ||||||||||||||||
Sbjct 121 GAAACAGTGA-ATTATATGCAGGAAAATCACAAGATTAGTCACCATCTCACCAAACCAAT 179
Query 196 A-G--AGT--C--CAGA--G----T-----TTTT--CAACAAGTACCACTTAAAACGGGA 235
| | || | |||| | | |||| ||||||||||||||||| ||| ||
Sbjct 180 ATGGGAGCAGCTTCAGAAAGAGAATGCAGATTTTTTCAACAAGTACCACTTAATACGCGA 239
Query 236 ATTAGCGCGTTATATAACGAT-GTGTAACAGTTTTCTTGGAAAGCAAGTTTCTCTGATAG 294
|||||||||| | |||| || || ||| ||||||||||||||||||||||||||||| |
Sbjct 240 ATTAGCGCGTCAAATAAA-ATTGTTTAATAGTTTTCTTGGAAAGCAAGTTTCTCTGAT-G 297
Query 295 -TCGAGCATGGAGCTCTTGATATCAATTA-TGCACCATCT 332
||||| |||||| | ||||||| | | | |||| |||||
Sbjct 298 CTCGAGAATGGAGATTTTGATATTAGT-ACTGCAACATCT 336
Score = 99.0 bits (53), Expect = 4e-20
Identities = 68/75 (91%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 463 GTACCAACCTTGGCGCTCCTACCGTTCCACCAGCAGCTAATGATCAATGGTTTACTTATA 522
||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 470 GTACCAATCTTGGAGCTTCTACCATTCCACCAGCAGCTAATGATCAATGGTTTCCTTATA 529
Query 523 -GTGATCCTGCGTGT 536
| ||||||||||||
Sbjct 530 AG-GATCCTGCGTGT 543
> AT3G45800.1 | Symbols: | Plant protein 1589 of unknown function
| chr3:16829482-16832207 REVERSE LENGTH=1773
Length=1773
Score = 152 bits (82), Expect = 3e-36
Identities = 133/155 (86%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 287 TCTGATAGTCGAGCATGGAGCTCTTGATATCAATTA-TGCACCATCTACACTCAAGAATT 345
|||||| |||||| |||||| ||||||||| || ||||||| | |||||||||
Sbjct 540 TCTGATGGTCGAGAATGGAGATCTTGATAT-TGGTACTGCACCA--T----TCAAGAATT 592
Query 346 TTCTTC-GTCAAGATCCTGAAGGAGCTCATCTCTTGGAGAAACTAGCTAATACACCTTC- 403
||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 593 TTC-TCGGTCAAGATCCTGAAGGAGCTCATCTCTTGGTGAAACTAGCGAATACACCTTCT 651
Query 404 GAATAGGTCAGACG-TGAGTCCTTCAAGCTTGGCA 437
|| ||||||||| | ||||||||||||||||||||
Sbjct 652 GA-TAGGTCAGA-GATGAGTCCTTCAAGCTTGGCA 684
> AT1G49700.1 | Symbols: | Plant protein 1589 of unknown function
| chr1:18388792-18390496 REVERSE LENGTH=840
Length=840
Score = 62.1 bits (33), Expect = 6e-09
Identities = 55/65 (85%), Gaps = 4/65 (6%)
Strand=Plus/Plus
Query 111 TGTATTCAAAAGTACATGAGTTTGGAAGAAACGGTGA-TATATCTGCATGA-CAATCACA 168
|||||||||||||||||||||||||||||||| ||| | ||| || |||| || | ||
Sbjct 64 TGTATTCAAAAGTACATGAGTTTGGAAGAAACCATGACT-TATATGTATGATCA-TGACC 121
Query 169 ATATT 173
|||||
Sbjct 122 ATATT 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28080888173
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5