BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924291
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gat... 765 0.0
AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gat... 549 3e-155
> AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gated
channel 12 | chr2:19065716-19069569 FORWARD LENGTH=3199
Length=3199
Score = 765 bits (414), Expect = 0.0
Identities = 967/1219 (79%), Gaps = 98/1219 (8%)
Strand=Plus/Plus
Query 254 GTCTGCCTTGCTGGTGTCAAAG-GACATATTAAAAAAGG-TTATA-ATATGTCAATATAT 310
|||||| | |||||||||| || || ||| | ||| || ||||| || |||||||| |
Sbjct 591 GTCTGCGTCGCTGGTGTCAGAGAGA-ATACT-GAAATGGATTATACTTA-GTCAATATGT 647
Query 311 ACCAAGAATCCTCCGTATCTATCCGCTTT-TCCAAGAAGTGACAAAG-GCCTCTGGTACG 368
|||||||||| | ||||| |||||||||| | |||||||||| ||| |||| |||||||
Sbjct 648 ACCAAGAATCATTCGTATGTATCCGCTTTAT-AAAGAAGTGAC-AAGAGCCTTTGGTACG 705
Query 369 GTAGTAGAAACAAAGTGGATTGGAGCTGCTTTAAATCTT-TTCCTCTACATGCTTC-CGA 426
|||| |||| |||||||| ||||||||||||||| ||| ||||| |||||||| | | |
Sbjct 706 GTAGCAGAATCAAAGTGGGCTGGAGCTGCTTTAAA-CTTATTCCTTTACATGCTGCAC-A 763
Query 427 GTTATGTCTTTGGGGGTTTCTGGTACTTGAATGCAATACAAAGGGAAAA-CTTATGCTGG 485
||||||| ||||||| ||| |||||||||| | ||||| ||| |||||| | ||| |||
Sbjct 764 GTTATGTGTTTGGGGCTTTTTGGTACTTGAGTTCAATAGAAA-GGAAAAGCAAATGTTGG 822
Query 486 CATGATGTGTGTGTTAGAACA--CG--TG-GAT-GCAATGTCATGAATCT-ATATTGTGC 538
| || | ||||| ||| ||| || || || || |||| | |||| | ||||
Sbjct 823 CGTGCCGCGTGTGCTAGGACATCCGACTGCAATCTCACGGTCACGGATCTGCT-TTGTAA 881
Query 539 ACGAGGTAGCGA-AGACAACAATT-GTTTTCTGAACAATTCATGCCCATTAATTGACCCT 596
||||| | || | |||||| ||| | || || |||| ||||||||||||||| ||||||
Sbjct 882 ACGAGCTGGC-AGTGACAAC-ATTCGATTCCTCAACACTTCATGCCCATTAATCGACCCT 939
Query 597 GGCCAAATCACAAACTCCACAGTCTTCAATTTTGGTATGTATATTGATGCATTGAAGTCA 656
| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 940 GCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATTGATGCATTGAAGTCA 999
Query 657 GGGGTGGTAGA-GT----CC--AGGTATTTTCCAAGGAAGTTCTTCTACTGCTTTTGGTG 709
|||||| |||| || || ||| ||||||| ||||| ||| |||| |||||||||||
Sbjct 1000 GGGGTGCTAGAGGTGAAACCAAAGG-ATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTG 1058
Query 710 GGGTCTTCGAAATCTTAGGTTTGTAAATCTAAACTTTATTGCTTTGGGCCAAAACCTGGA 769
||||| || | || || | | ||| |||||||||||||||||||||
Sbjct 1059 GGGTC-TC-----C--------GT-AA--T--A--TTAGTGCTTTGGGCCAAAACCTGGA 1097
Query 770 GACAAGCAACTCTGTAGAGGAGATCGTGTTTGCTATCAACATCTGTATACT-TGGTTTAC 828
|||||||||||||| || |||||| | |||||||||| ||| ||| | || ||||||||
Sbjct 1098 GACAAGCAACTCTGCAGGGGAGATTTTCTTTGCTATCATCATATGTGT-CTCTGGTTTAC 1156
Query 829 TCTTGTTTGCTTTACTCATTGGAAACGTTCAGAAGTACTTGCAATCGA-CTACGATCAAA 887
||||||||||| | |||||||||||||||||||||||||||||||| | |||| | | |
Sbjct 1157 TCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTGCAATC-ATCTACTA-CTAG 1214
Query 888 A-TAGATGAAATGGAGGAGAGAAAA-AGAGACATAGAAAAATGGATGTCTTATCGGAACC 945
| |||||||||||||||||| ||| ||||||| ||||||||||||||| || |||
Sbjct 1215 AGTAGATGAAATGGAGGAGA-AAAGGAGAGACACAGAAAAATGGATGTCCTACCGGGTGA 1273
Query 946 TACCCGACG-ATCTCAAGCAACGCATTAGGAAATACGGGGAATACACATGGAAACAAACT 1004
|||| || | || | ||| |||||||||||| || | || |||| |||| | ||||
Sbjct 1274 TACCAGA-GTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGCGAGAAACC 1332
Query 1005 AGAGGCATC-GAAGAAGAAGCTCTTCTTCGTAGCCTTCCTATAGACCTCAGACTCGAAAC 1063
| ||| | | ||||| ||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1333 A-AGGGAACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAAC 1391
Query 1064 CAAACGAC-ATCTTTACCTGAATCTATTAAAGGGTGTTCCTTTGTTTGAGGGCATAGATG 1122
|||||| | |||||||| || || | |||||| ||||||| | | || | ||| ||||
Sbjct 1392 CAAACG-CTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTTAACATCATGGATG 1450
Query 1123 ATGGTTGGTTACTAGCAGCAGTGTGCAACCGGGTGAAGTATGTGTTCTACTCGGCAGAT- 1181
|||||||| |||||| ||| |||||| |||||||||||| ||||||||| | || ||
Sbjct 1451 ATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTCTATTTAGC-GAAC 1509
Query 1182 AGCTACATAGTAAAAGAGGGTG-ACCCA-TTGGAGGAAATGCTGATTATAACAAAAGGAA 1239
|||| |||||| | |||||| | ||||| ||| |||| ||||||||| |||| | ||| |
Sbjct 1510 AGCTTCATAGTGAGAGAGGG-GCACCCAGTTG-AGGAGATGCTGATTGTAACGAGAGGCA 1567
Query 1240 AACTAAAAAGTACAACTAGG-TCTCATGAAATAGGTGAA-G-AACTA--------A---- 1284
| || ||||||||||| || ||||||||||| |||| | ||| | |
Sbjct 1568 AGCTGAAAAGTACAACC-GGATCTCATGAAATGGGTGTCCGCAACAATTGTTGTGACCTC 1626
Query 1285 -AAGCA-GGTGACATATGTGGACAACTTCTCTTTAATAGTTCTTGCCTTCCCACCTCAAC 1342
||| | ||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||
Sbjct 1627 CAAG-ATGGTGACATATGTGGAGAACTTCTCTTCAATGGTTCTCGCCTTCCTACCTCAAC 1685
Query 1343 CAGAACTATAATAACTCTT-ACCGAAGTTGAAGGCTTCACTCTCTCGCCTGATGATGTCA 1401
|||||| |||| ||| || || ||||||||||| |||| ||||| |||||||||| |||
Sbjct 1686 CAGAACCGTAATGACT-TTGACTGAAGTTGAAGGTTTCATTCTCTTGCCTGATGATATCA 1744
Query 1402 AGTTTGTAGCTTCTCATTT 1420
||||| |||||||||||||
Sbjct 1745 AGTTTATAGCTTCTCATTT 1763
Score = 172 bits (93), Expect = 7e-42
Identities = 181/221 (82%), Gaps = 16/221 (7%)
Strand=Plus/Plus
Query 7 GGAGTAAGACAGTCATGTTA-CTTTGCTTTGCTGCTTTCGCTATTGATCCTTTGTTTCTG 65
|||| ||||| ||| ||||| | |||| | | |||||| |||||||||||||||||||||
Sbjct 248 GGAGGAAGACCGTCTTGTTAGC-TTGCGTGGTTGCTTTGGCTATTGATCCTTTGTTTCTG 306
Query 66 TTTATCCCTGTGATTGATTCTCATAGATTCTGCTTTACTTAT-GACAAGA-AGCTAGGA- 122
||||||||| ||||||||||||| ||||| ||||| |||| | ||||||| | || | |
Sbjct 307 TTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTT-TCGACAAGACA-CTTGTAG 364
Query 123 CTAGCAGCTTGTCTCATTCGTATTTTTATCGACTCATTCTATGTAATTCACATCATTT-T 181
| || || |||| ||||||||| |||||| ||| | |||||||| ||||||||||||| |
Sbjct 365 C-AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTAT 423
Query 182 C--CGTTCAATAACCGAG-CTCATTGCTCCTCGATCACAAG 219
| || | |||||||| | |||||||||||| || ||||
Sbjct 424 TATC-TT-A-TAACCGAGAC-CATTGCTCCTCGTTCTCAAG 460
> AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gated
channels | chr2:19061861-19064881 FORWARD LENGTH=2340
Length=2340
Score = 549 bits (297), Expect = 3e-155
Identities = 682/856 (80%), Gaps = 73/856 (9%)
Strand=Plus/Plus
Query 254 GTCTGCCTTGCTGGTGTCAAAG-GACATATTAAAAAAGG-TTATA-ATATGTCAATATAT 310
|||||| | |||||||||| || || ||| | ||| || ||||| || |||||||| |
Sbjct 683 GTCTGCGTCGCTGGTGTCAGAGAGA-ATACT-GAAATGGATTATACTTA-GTCAATATGT 739
Query 311 ACCAAGAATCCTCCGTATCTATCCGCTTT-TCCAAGAAGTGACAAAG-GCCTCTGGTACG 368
|||||||||| | ||||| |||||||||| | |||||||||| ||| |||| |||||||
Sbjct 740 ACCAAGAATCATTCGTATGTATCCGCTTTAT-AAAGAAGTGAC-AAGAGCCTTTGGTACG 797
Query 369 GTAGTAGAAACAAAGTGGATTGGAGCTGCTTTAAATCTT-TTCCTCTACATGCTTC-CGA 426
|||| |||| ||||| || | |||||||||||||| ||| ||||| |||||||| | | |
Sbjct 798 GTAGCAGAATCAAAGCGGGTCGGAGCTGCTTTAAA-CTTCTTCCTTTACATGCTGCAC-A 855
Query 427 GTTATGTCTTTGGGGGTTTCTGGTACTTGAATGCAATACAAAGGGAAAA-CTTATGCTGG 485
||||||| | ||||| ||| ||||| |||| | ||||| ||| |||||| | ||| |||
Sbjct 856 GTTATGTGTGTGGGGCTTTTTGGTATTTGAGTTCAATAGAAA-GGAAAAGCACATGTTGG 914
Query 486 CATGATGTGTGTGTTAGAACA--CG--TG-GAT-GCAATGTCATGAATCT-ATATTGTGC 538
| || | ||||| ||| ||| || || || || |||| | |||| | ||||
Sbjct 915 CGTGCCGCGTGTGCTAGGACATCCGACTGCAATCTCACGGTCACGGATCTGCT-TTGTAA 973
Query 539 ACGAGGTAGCG-A-AGACAACAATT-GTTTTCTGAACAATTCATGCCCATTAATTGACCC 595
||||| | | | | |||||| ||| ||||||| |||| |||||||||||||| |||||
Sbjct 974 ACGAGCT-G-GTAGTGACAAC-ATTCGTTTTCTCAACACCTCATGCCCATTAATCGACCC 1030
Query 596 TGGCCAAATCACAAACTCCACAGTCTTCAATTTTGGTATGTATATTGATGCATTGAAGTC 655
|| |||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||
Sbjct 1031 TGCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATTGATGCGTTGAAGTC 1090
Query 656 AGGGGTGGTAGA-GT----CC--AGGTATTTTCCAAGGAAGTTCTTCTACTGCTTTTGGT 708
|||||| |||| || || ||| ||||||| ||||| ||| |||| ||||||||||
Sbjct 1091 AGGGGTCCTAGAGGTGAAACCAAAGG-ATTTTCCCAGGAAATTCGTCTATTGCTTTTGGT 1149
Query 709 GGGGTCTTCGAAATCTTAGGTTTGTAAATCTAAACTTTATTGCTTTGGGCCAAAACCTGG 768
|||||| || | || || | | ||| ||||||||||||||||||||
Sbjct 1150 GGGGTC-TC-----C--------GT-AA--T--A--TTAGTGCTTTGGGCCAAAACCTGG 1188
Query 769 AGACAAGCAACTCTGTAGAGGAGATCGTGTTTGCTATCAACATCTGTATACT-TGGTTTA 827
||||||||||||||| || |||||| | |||||||||| ||| ||| | || |||||||
Sbjct 1189 AGACAAGCAACTCTGCAGGGGAGATTTTCTTTGCTATCATCATATGTGT-CTCTGGTTTA 1247
Query 828 CTCTTGTTTGCTTTACTCATTGGAAACGTTCAGAAGTACTTGCAATCGA-CTACGATCAA 886
|||||||||||| | |||||||||||||||||||||||||||||||| | |||||| | |
Sbjct 1248 CTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTGCAATC-ATCTACGA-CTA 1305
Query 887 AA-TAGATGAAATGGAGGAGAGAAAA-AGAGACATAGAAAAATGGATGTCTTATCGGAAC 944
| ||||||||||||| |||| |||| ||||||| ||||||||||||||| |||||| |
Sbjct 1306 GAGTAGATGAAATGGAAGAGA-AAAAGAGAGACACAGAAAAATGGATGTCCTATCGGGAG 1364
Query 945 CTACCCGACG-ATCTCAAGCAACGCATTAGGAAATACGGGGAATACACATGGA-AACAAA 1002
|||| || | || | ||| |||||||||||| || | || |||| ||||| || ||
Sbjct 1365 ATACCAGA-GTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGAGAAGAAC 1423
Query 1003 CTAGAGGCATCGAAGAAGAAGCTCTTCTTCGTAGCCTTCCTATAGACCTCAGACTCGAAA 1062
| | ||||| |||||| ||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 1424 CAA-AGGCACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAA 1482
Query 1063 CCAAACGAC-ATCTTT 1077
||||||| | ||||||
Sbjct 1483 CCAAACG-CTATCTTT 1497
Score = 172 bits (93), Expect = 7e-42
Identities = 181/221 (82%), Gaps = 16/221 (7%)
Strand=Plus/Plus
Query 7 GGAGTAAGACAGTCATGTTA-CTTTGCTTTGCTGCTTTCGCTATTGATCCTTTGTTTCTG 65
|||| ||||| ||| ||||| | |||| | | |||||| |||||||||||||||||||||
Sbjct 340 GGAGGAAGACCGTCTTGTTAGC-TTGCGTGGTTGCTTTGGCTATTGATCCTTTGTTTCTG 398
Query 66 TTTATCCCTGTGATTGATTCTCATAGATTCTGCTTTACTTAT-GACAAGA-AGCTAGGA- 122
||||||||| ||||||||||||| ||||| ||||| |||| | ||||||| | || | |
Sbjct 399 TTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTT-TCGACAAGACA-CTTGTAG 456
Query 123 CTAGCAGCTTGTCTCATTCGTATTTTTATCGACTCATTCTATGTAATTCACATCATTT-T 181
| || || |||| ||||||||| |||||| ||| | |||||||| ||||||||||||| |
Sbjct 457 C-AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTAT 515
Query 182 C--CGTTCAATAACCGAG-CTCATTGCTCCTCGATCACAAG 219
| || | |||||||| | |||||||||||| || ||||
Sbjct 516 TATC-TT-A-TAACCGAGAC-CATTGCTCCTCGTTCTCAAG 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5