BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924296

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35915.1 | Symbols:  | unknown pseudogene | chr5:14044866-14...   708    0.0  
  AT5G27260.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   658    0.0  


> AT5G35915.1 | Symbols:  | unknown pseudogene | chr5:14044866-14045859 
FORWARD LENGTH=918
Length=918

 Score =  708 bits (383),  Expect = 0.0
 Identities = 435/460 (95%), Gaps = 4/460 (1%)
 Strand=Plus/Plus

Query  109  GTACGGATGCACGTACGTACAAAGCTGGGA-AGAATTCAAGAGAAGAATATGT-GAGTGA  166
            |||||||||||| ||||||||||||| ||| ||||| ||||| |||||||||| || |||
Sbjct  461  GTACGGATGCACTTACGTACAAAGCT-GGAGAGAATCCAAGAAAAGAATATGTGGA-TGA  518

Query  167  TTTTGACAACGGGTATGAGTATGATACAACAACTCATCATGAGTCATCAGAGCATTACGC  226
            ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct  519  TTTTGACAACGTGTATGAGTATGATACTACAACTCATCATGAGTCATCGGAGCATTACAC  578

Query  227  ACCATTCATGTCTCATGGAACTTCAGAAAGTCCAACGGAGAAGCTTCCCCCACGTAAAAG  286
            |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  579  ACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAAGCTTCCCCCACGTAAAAG  638

Query  287  AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTCTTAGCAG  346
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  639  AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTGTTAGCAG  698

Query  347  TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAAAGAAGTGGCACaaaa  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  699  TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAAAGAAGTGGCACAGAA  758

Query  407  aaaaaaTAACGTTTGGGATGCTCTAAAAGAAATTTCTGATTTGGATAAACGTATTCGTTT  466
            ||| |||||||||||||||||| |||||||||||||||| |||||| || ||||||||| 
Sbjct  759  AAAGAATAACGTTTGGGATGCTATAAAAGAAATTTCTGACTTGGATGAATGTATTCGTTA  818

Query  467  CAAGGCACTTACCAAGATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT  526
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  819  CAAGGCACTTACCAAAATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT  878

Query  527  GGAAGAGAGGCTAGGATGGATTCAAACCAGTATGGAATAA  566
            |||||||||||||||||| |||||||||| ||||||||||
Sbjct  879  GGAAGAGAGGCTAGGATGAATTCAAACCATTATGGAATAA  918


> AT5G27260.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G29880.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:9603943-9604930 FORWARD LENGTH=912
Length=912

 Score =  658 bits (356),  Expect = 0.0
 Identities = 427/460 (93%), Gaps = 10/460 (2%)
 Strand=Plus/Plus

Query  109  GTACGGATGCACGTACGTACAAAGCTGGGA-AGAATTCAAGAGAAGAATATGT-GAGTGA  166
            ||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||| || |||
Sbjct  461  GTACGGATGGACTTACGTACAGAGCT-GGAGAGAATCCAAGAAAAGAATATGTGGA-TGA  518

Query  167  TTTTGACAACGGGTATGAGTATGATACAACAACTCATCATGAGTCATCAGAGCATTACGC  226
            ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct  519  TTTTGACAACGTGTATGAGTATGATACTACAACTCATCATGAGTCATCGGAGCACTACGC  578

Query  227  ACCATTCATGTCTCATGGAACTTCAGAAAGTCCAACGGAGAAGCTTCCCCCACGTAAAAG  286
            |||||| |||||||||||||||||||||||| |  |    ||||||||||||||||||||
Sbjct  579  ACCATTTATGTCTCATGGAACTTCAGAAAGT-C--C---TAAGCTTCCCCCACGTAAAAG  632

Query  287  AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTCTTAGCAG  346
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  633  AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTGTTAGCAG  692

Query  347  TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAAAGAAGTGGCACaaaa  406
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  693  TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAATGAAGTGGCACAGAA  752

Query  407  aaaaaaTAACGTTTGGGATGCTCTAAAAGAAATTTCTGATTTGGATAAACGTATTCGTTT  466
            ||| |||||||||||||||||| |||||||||||||||| |||||| || ||||||||| 
Sbjct  753  AAAGAATAACGTTTGGGATGCTATAAAAGAAATTTCTGACTTGGATGAATGTATTCGTTA  812

Query  467  CAAGGCACTTACCAAGATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT  526
            |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  CAAGGCACTTACGAAAATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT  872

Query  527  GGAAGAGAGGCTAGGATGGATTCAAACCAGTATGGAATAA  566
            ||||||||||||||||||||||||||||| ||||||||||
Sbjct  873  GGAAGAGAGGCTAGGATGGATTCAAACCATTATGGAATAA  912



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28231590614


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5