BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924298 Length=343 Score E Sequences producing significant alignments: (Bits) Value AT5G36290.1 | Symbols: | Uncharacterized protein family (UPF00... 329 8e-90 > AT5G36290.1 | Symbols: | Uncharacterized protein family (UPF0016) | chr5:14302739-14305176 FORWARD LENGTH=1224 Length=1224 Score = 329 bits (178), Expect = 8e-90 Identities = 233/259 (90%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 85 TTGGCGACTCACAAGAACGCTATAGGATTGTCCATCGGGGCAACTATTGGACA-AATGCG 143 |||||||||||||||||||| |||||| || |||| ||||||| ||||||||| | | | Sbjct 832 TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACACT--G 889 Query 144 TTGTGTACTTCACCAGCGGTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGG 203 |||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||| Sbjct 890 -TGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGT 948 Query 204 ACGGTTGCAACTGTTGGAGGCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTAT 263 ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 949 ACGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTAT 1008 Query 264 CCTCCACTACAGTCAATGCGCTTCTTTCGAAAATGGGTGTTGGAGACA-TTGTCTAAGTA 322 |||||| | ||| |||| |||||||||||||||||||||| |||||| || |||||||| Sbjct 1009 CCTCCATTGTAGTAAATGTGCTTCTTTCGAAAATGGGTGTTAGAGACAATT-TCTAAGTA 1067 Query 323 AAGTTTCAAtttttttttt 341 ||||||||||||||||||| Sbjct 1068 AAGTTTCAATTTTTTTTTT 1086 Score = 119 bits (64), Expect = 2e-26 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1 GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA 60 ||| ||||||||||| ||||| | |||||||||||| |||||||||| |||||||||||| Sbjct 688 GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA 747 Query 61 TTTTGTACCCCAATATTTCTAGAGT 85 |||||||||||||||||||| |||| Sbjct 748 TTTTGTACCCCAATATTTCTGGAGT 772 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16035411931 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5