BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924298

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF00...   329    8e-90


> AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF0016) 
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224

 Score =  329 bits (178),  Expect = 8e-90
 Identities = 233/259 (90%), Gaps = 6/259 (2%)
 Strand=Plus/Plus

Query  85    TTGGCGACTCACAAGAACGCTATAGGATTGTCCATCGGGGCAACTATTGGACA-AATGCG  143
             |||||||||||||||||||| |||||| || |||| ||||||| ||||||||| | |  |
Sbjct  832   TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACACT--G  889

Query  144   TTGTGTACTTCACCAGCGGTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGG  203
              |||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||| 
Sbjct  890   -TGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGT  948

Query  204   ACGGTTGCAACTGTTGGAGGCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTAT  263
             ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  949   ACGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTAT  1008

Query  264   CCTCCACTACAGTCAATGCGCTTCTTTCGAAAATGGGTGTTGGAGACA-TTGTCTAAGTA  322
             |||||| |  ||| |||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct  1009  CCTCCATTGTAGTAAATGTGCTTCTTTCGAAAATGGGTGTTAGAGACAATT-TCTAAGTA  1067

Query  323   AAGTTTCAAtttttttttt  341
             |||||||||||||||||||
Sbjct  1068  AAGTTTCAATTTTTTTTTT  1086


 Score =  119 bits (64),  Expect = 2e-26
 Identities = 78/85 (92%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  1    GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA  60
            ||| ||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct  688  GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA  747

Query  61   TTTTGTACCCCAATATTTCTAGAGT  85
            |||||||||||||||||||| ||||
Sbjct  748  TTTTGTACCCCAATATTTCTGGAGT  772



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5