BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924303
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56240.1 | Symbols: AtPP2-B13, PP2-B13 | phloem protein 2-B1... 1201 0.0
AT1G56250.1 | Symbols: AtPP2-B14, PP2-B14 | phloem protein 2-B1... 1173 0.0
AT1G56242.1 | Symbols: | other RNA | chr1:21056401-21057815 FO... 634 0.0
> AT1G56240.1 | Symbols: AtPP2-B13, PP2-B13 | phloem protein 2-B13
| chr1:21056232-21057577 REVERSE LENGTH=1142
Length=1142
Score = 1201 bits (650), Expect = 0.0
Identities = 785/852 (92%), Gaps = 1/852 (0%)
Strand=Plus/Plus
Query 12 AAA-GAAGAAGAAAATGATGTTACCAGAAGCATGTGTAGCCAACATCCTTGCCTTCACAT 70
||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 158 AAAGGAAGAAGATGATGATGTTACCTGAAGCATGCGTAGCCAACATCCTTGCCTTCACAT 217
Query 71 CTCCGGCGGATGCATTCTCTTCGTCGGAAGTCTCTTCCATTTTCCGGTTAGCCGGAGACT 130
|||| || |||||||| || || |||||||||||||| | ||||||||||| |||||||
Sbjct 218 CTCCAGCCGATGCATTTTCGTCATCGGAAGTCTCTTCGGTGTTCCGGTTAGCGGGAGACT 277
Query 131 CTGATTTCGTATGGGAAAAGTTTTTGCCTTCAGATTACCAAAGCATCATTTCTCAATCCA 190
| ||||| ||||||||||||||| | || || ||||| ||||| |||| |||||||| |
Sbjct 278 CCGATTTTGTATGGGAAAAGTTTCTACCGTCCCATTACAAAAGCCTCATCTCTCAATCTA 337
Query 191 CTGATCATCATAGGAGTTTTTCTTCCAAAAAGGAGATTTATCGATGTTTGTGTGACTCTC 250
||||||| ||| ||| |||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 338 CTGATCACCATCGGATTTTTTCGTCCAAAAAGGAGATTTATCGATGTTTATGTGACTCTC 397
Query 251 TTCTCATCGATAATGCTCGAAAGCTCTTCAAGATCAATAAATTTTCCGGGAAAATTTCCT 310
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 398 TTCTCATCGATAATGCTCGAAAGCTGTTCAAGATCAATAAATTTTCCGGGAAAATTTCCT 457
Query 311 ACATTTTATCAGCAAGAGATATTTCCATAACACATAGTGACCATGCATCTTACTGGTCTT 370
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 458 ACATTTTATCAGCAAGAGATATTTCCATAACTTATAGTGACCATGCATCGTACTGCTCTT 517
Query 371 GGAGCAATGTCTCAGATTCTAGATTTTCGGAGTCAGCTGAACTTATAACGACAGATCGAT 430
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 518 GGAGCAATGTCTCAGATTCTAGATTTTCAGAGTCAGCTGAACTTATAACAACAGACCGAT 577
Query 431 TAGAAATCAAGGGTAAAATTCAAACCGGAGTTTTGTCACCAAACACAAGATACGGAGCAT 490
|||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||
Sbjct 578 TAGAAATCAAGGGTAAAATTCAAACCACAGTTTTATCACCAAACACAAAATATGGAGCAT 637
Query 491 ATCTCATAATGAAAGTCACTAAAGGTGCTTACGGACTAGACCTAGTTCCAGCGGAGACTT 550
||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 638 ATCTCATCATGAAAGTAACTAACGGTGCTTACGGACTAGACCTAGTTCCGGCGGAGACAT 697
Query 551 CGGTAAAATCTAAGAATGGTCAAAATATTAAGAACACAACTTATTTATGTTGCTTGGATG 610
|||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 698 CGGTTAAATCTAAGAATGGTCAAAATAATAAGAACACAACTTATCTATGTTGCTTGGATG 757
Query 611 AGAAGAAACAACAAATGAAGCGGTTATTTTATGGAAACCGAGAAGAACGAATGGCGATGA 670
|||||||||| |||||||||||| ||||||| || ||||||||||| |||||||||||||
Sbjct 758 AGAAGAAACAGCAAATGAAGCGGCTATTTTACGGGAACCGAGAAGAGCGAATGGCGATGA 817
Query 671 CTGTGGAAACGGTAGGCGGAGACGGGAAAAGGAGAGAGCCAAAAGGTAGAGACGACGGTT 730
||||||| | ||||||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct 818 CTGTGGAGGCCGTAGGCGGAGACGGGAAAAGGAGGGAGCCGAAAGCTAGAGACGACGGGT 877
Query 731 GGATGGAGATTGAGTTAGGAGAGTTTGAGACACGAGAAGGAGAAGATGATGAAGTCAATA 790
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 878 GGTTGGAGATTGAGTTAGGAGAGTTTGTGACACGAGAAGGAGAAGATGATGAAGTCAATA 937
Query 791 TGAGTCTTACGGAGGTGAAAGGATATCAACTTAAAGGTGGAATTGTGATCGATGGTATTG 850
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 938 TGAGTCTTACGGAGGTGAAAGGATATCAACTGAAAGGTGGAATTGTGATTGATGGTATTG 997
Query 851 AAGTGAGGCCTA 862
||||||||||||
Sbjct 998 AAGTGAGGCCTA 1009
> AT1G56250.1 | Symbols: AtPP2-B14, PP2-B14 | phloem protein 2-B14
| chr1:21061600-21062995 REVERSE LENGTH=1146
Length=1146
Score = 1173 bits (635), Expect = 0.0
Identities = 779/851 (92%), Gaps = 0/851 (0%)
Strand=Plus/Plus
Query 13 AAGAAGAAGAAAATGATGTTACCAGAAGCATGTGTAGCCAACATCCTTGCCTTCACATCT 72
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 143 AAGAAGAAGATGATGATGTTACCAGAAGCATGCATAGCCAACATCCTTGCCTTCACATCT 202
Query 73 CCGGCGGATGCATTCTCTTCGTCGGAAGTCTCTTCCATTTTCCGGTTAGCCGGAGACTCT 132
||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 203 CCGGCGGATGCATTCTCGTCGTCAGAGGTCTCTTCGGTTTTCCGGTTAGCCGGAGACTCT 262
Query 133 GATTTCGTATGGGAAAAGTTTTTGCCTTCAGATTACCAAAGCATCATTTCTCAATCCACT 192
||||||||||||||||||||| | || || |||||| ||||| |||| |||||||| |||
Sbjct 263 GATTTCGTATGGGAAAAGTTTCTACCATCGGATTACAAAAGCCTCATCTCTCAATCTACT 322
Query 193 GATCATCATAGGAGTTTTTCTTCCAAAAAGGAGATTTATCGATGTTTGTGTGACTCTCTT 252
||||||||| ||| | ||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 323 GATCATCATTGGAATATTTCTTCCAAAAAAGAAATTTATCGATGTTTATGTGACTCTCTT 382
Query 253 CTCATCGATAATGCTCGAAAGCTCTTCAAGATCAATAAATTTTCCGGGAAAATTTCCTAC 312
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 383 CTCATCGATAATGCTCGAAAGCTGTTCAAGATCAATAAATTTTCCGGAAAAATTTCCTAC 442
Query 313 ATTTTATCAGCAAGAGATATTTCCATAACACATAGTGACCATGCATCTTACTGGTCTTGG 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GTTTTATCAGCAAGAGATATTTCCATAACACATAGTGACCATGCATCTTACTGGTCTTGG 502
Query 373 AGCAATGTCTCAGATTCTAGATTTTCGGAGTCAGCTGAACTTATAACGACAGATCGATTA 432
||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||
Sbjct 503 AGCAATGTCTCAGATTCTAGATTCTCGGAGTCAGCTGAACTTATAATAACCGATCGTTTA 562
Query 433 GAAATCAAGGGTAAAATTCAAACCGGAGTTTTGTCACCAAACACAAGATACGGAGCATAT 492
|||||| |||||||||| |||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 563 GAAATCGAGGGTAAAATCCAAACCAGAGTTTTATCAGCAAACACAAGATACGGAGCATAT 622
Query 493 CTCATAATGAAAGTCACTAAAGGTGCTTACGGACTAGACCTAGTTCCAGCGGAGACTTCG 552
|||||| ||||||| || ||||| || |||||||| ||||||||||| || |||||||||
Sbjct 623 CTCATAGTGAAAGTAACAAAAGGCGCCTACGGACTTGACCTAGTTCCGGCAGAGACTTCG 682
Query 553 GTAAAATCTAAGAATGGTCAAAATATTAAGAACACAACTTATTTATGTTGCTTGGATGAG 612
| |||||||| || ||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 683 ATTAAATCTAAAAACGGTCAAATTAGTAAGAGTGCAACTTATCTATGTTGCTTGGATGAG 742
Query 613 AAGAAACAACAAATGAAGCGGTTATTTTATGGAAACCGAGAAGAACGAATGGCGATGACT 672
|| |||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||
Sbjct 743 AAAAAACAACAAATGAAGCGGCTATTTTACGGGAACCGAGAAGAGCGAATGGCGATGACT 802
Query 673 GTGGAAACGGTAGGCGGAGACGGGAAAAGGAGAGAGCCAAAAGGTAGAGACGACGGTTGG 732
|||||| |||| ||||| |||||||||||||||||||| ||| ||||||| ||||| |||
Sbjct 803 GTGGAAGCGGTTGGCGGGGACGGGAAAAGGAGAGAGCCGAAATGTAGAGATGACGGATGG 862
Query 733 ATGGAGATTGAGTTAGGAGAGTTTGAGACACGAGAAGGAGAAGATGATGAAGTCAATATG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 ATGGAGATTGAGTTAGGAGAGTTTGAGACACGAGAAGGAGAAGATGATGAAGTCAATATG 922
Query 793 AGTCTTACGGAGGTGAAAGGATATCAACTTAAAGGTGGAATTGTGATCGATGGTATTGAA 852
| |||||| |||||||||||||||||||| |||||||| ||| |||| ||||||||||||
Sbjct 923 ACTCTTACAGAGGTGAAAGGATATCAACTAAAAGGTGGCATTTTGATTGATGGTATTGAA 982
Query 853 GTGAGGCCTAA 863
|||||||||||
Sbjct 983 GTGAGGCCTAA 993
> AT1G56242.1 | Symbols: | other RNA | chr1:21056401-21057815
FORWARD LENGTH=1252
Length=1252
Score = 634 bits (343), Expect = 0.0
Identities = 408/440 (93%), Gaps = 1/440 (0%)
Strand=Plus/Minus
Query 387 TTCTAGATTTTCGGAGTCAGCTGAACTTATAACGACAGATCGATTAGAAATCAAGGGTAA 446
||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 439 TTC-AGATTTTCAGAGTCAGCTGAACTTATAACAACAGACCGATTAGAAATCAAGGGTAA 381
Query 447 AATTCAAACCGGAGTTTTGTCACCAAACACAAGATACGGAGCATATCTCATAATGAAAGT 506
|||||||||| |||||| ||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 380 AATTCAAACCACAGTTTTATCACCAAACACAAAATATGGAGCATATCTCATCATGAAAGT 321
Query 507 CACTAAAGGTGCTTACGGACTAGACCTAGTTCCAGCGGAGACTTCGGTAAAATCTAAGAA 566
||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 320 AACTAACGGTGCTTACGGACTAGACCTAGTTCCGGCGGAGACATCGGTTAAATCTAAGAA 261
Query 567 TGGTCAAAATATTAAGAACACAACTTATTTATGTTGCTTGGATGAGAAGAAACAACAAAT 626
||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 260 TGGTCAAAATAATAAGAACACAACTTATCTATGTTGCTTGGATGAGAAGAAACAGCAAAT 201
Query 627 GAAGCGGTTATTTTATGGAAACCGAGAAGAACGAATGGCGATGACTGTGGAAACGGTAGG 686
||||||| ||||||| || ||||||||||| |||||||||||||||||||| | |||||
Sbjct 200 GAAGCGGCTATTTTACGGGAACCGAGAAGAGCGAATGGCGATGACTGTGGAGGCCGTAGG 141
Query 687 CGGAGACGGGAAAAGGAGAGAGCCAAAAGGTAGAGACGACGGTTGGATGGAGATTGAGTT 746
|||||||||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||
Sbjct 140 CGGAGACGGGAAAAGGAGGGAGCCGAAAGCTAGAGACGACGGGTGGTTGGAGATTGAGTT 81
Query 747 AGGAGAGTTTGAGACACGAGAAGGAGAAGATGATGAAGTCAATATGAGTCTTACGGAGGT 806
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 AGGAGAGTTTGTGACACGAGAAGGAGAAGATGATGAAGTCAATATGAGTCTTACGGAGGT 21
Query 807 GAAAGGATATCAACTTAAAG 826
||||||||||||||| ||||
Sbjct 20 GAAAGGATATCAACTGAAAG 1
Score = 294 bits (159), Expect = 8e-79
Identities = 211/237 (89%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 37 GAAGCATGTGTAGCCAACATCCTTGCCTTCACATCTCCGGCGGATGCATTCTCTTCGTCG 96
|||||||| ||||||||||||||||||||||||||||| || |||||||| || || |||
Sbjct 994 GAAGCATGCGTAGCCAACATCCTTGCCTTCACATCTCCAGCCGATGCATTTTCGTCATCG 935
Query 97 GAAGTCTCTTCCATTTTCCGGTTAGCCGGAGACTCTGATTTCGTATGGGAAAAGTTTTTG 156
||||||||||| | ||||||||||| |||||||| ||||| ||||||||||||||| |
Sbjct 934 GAAGTCTCTTCGGTGTTCCGGTTAGCGGGAGACTCCGATTTTGTATGGGAAAAGTTTCTA 875
Query 157 CCTTCAGATTACCAAAGCATCATTTCTCAATCCACTGATCATCATAGGAGTTTTTCTTCC 216
|| || ||||| ||||| |||| |||||||| |||||||| ||| ||| |||||| |||
Sbjct 874 CCGTCCCATTACAAAAGCCTCATCTCTCAATCTACTGATCACCATCGGATTTTTTCGTCC 815
Query 217 AAAAAGGAGATTTATCGATGTTTGTGTGACTCTCTTCTCATCGATAATGCTCGAAAG 273
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 814 AAAAAGGAGATTTATCGATGTTTATGTGACTCTCTTCTCATCGATAATGCTCGAAAG 758
Score = 196 bits (106), Expect = 2e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 272 AGCTCTTCAAGATCAATAAATTTTCCGGGAAAATTTCCTACATTTTATCAGCAAGAGATA 331
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGCTGTTCAAGATCAATAAATTTTCCGGGAAAATTTCCTACATTTTATCAGCAAGAGATA 607
Query 332 TTTCCATAACACATAGTGACCATGCATCTTACTGGTCTTGGAGCAATGTCTCAGATTCTA 391
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 606 TTTCCATAACTTATAGTGACCATGCATCGTACTGCTCTTGGAGCAATGTCTCAGATTCTA 547
Query 392 G 392
|
Sbjct 546 G 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5