BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924306
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56290.1 | Symbols: | CwfJ-like family protein | chr1:21075... 3306 0.0
> AT1G56290.1 | Symbols: | CwfJ-like family protein | chr1:21075286-21078778
FORWARD LENGTH=2416
Length=2416
Score = 3306 bits (1790), Expect = 0.0
Identities = 1996/2095 (95%), Gaps = 15/2095 (1%)
Strand=Plus/Plus
Query 10 ATATTGTTAACATGTTTTCTGGGATAAAGATCATACCTCGTGATGAAGTGGTTGATGATA 69
|||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 157 ATATTGTTAATATGTTTTCTGGGATAAAGATCATACCTCGTGATGAGGTGCATGATGATA 216
Query 70 GTTCGGATGGGGAAA-ATGAGAAATCTAAAGGTGGGAAGGACAGAAGAAGAAAGAACAAG 128
||| ||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 217 GTTGGGAGGGGGAAAGA-GAGAAATCTAAAGGTGGGAAGGATAGAAGAAGAAAGAACAAG 275
Query 129 GACGTTGATAGAAAGGACCGTAGGGGAGAAGGAAGTAAGAGAGATGGGAAGAAGATTGCC 188
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GACGTAAATAGAAAGGAGCGTAGGGGAGAAGGAAGTAAGAGAGATGGGAAGAAGATTGCC 335
Query 189 AAGAGTGGAGATGGCGAGACCGTTCATGATGACTTTCTTGAAGGGGATATAGTTAGAAAG 248
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 336 AAGAGTGGAGATGGCGAGACCGTTGATGATGACTTGCTTGAAGGGGATATTGTTAGAAAG 395
Query 249 AAAATTGGTCTCGATTGGATGCTGCCGCCAACCCGAAAGGCTGATCCAAACCCTGCTTCA 308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AAAATGGGTCTCGATTGGATGCTGCCGCCAACCCGAAAGGCTGATCCAAACCCTGCTTCA 455
Query 309 GATGTAGAGGATAAATTCGAAGAAAGTGCACCTGAGGTAACTAAAGTGAACCCAAGGGAA 368
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 456 GATGTAGAGGATAAATTTGAAGAAAGTGCACCTGAGGTAACTAAAGTTAACCCAAGGGAA 515
Query 369 CTAAATCCTTATTTGAAAGAAAATGGAACCGGTTATCCAGAGGAAGAATCTGAGAAAAAA 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CTAAATCCTTATTTGAAAGAAAATGGAACCGGTTATCCAGAGGAAGAATCTGAGAAAAAA 575
Query 429 CATGGTAAAGACCAGCTTTTACCATCTTCGGTTGTTGGGGATGGGGGTGCGAGTTGGAGA 488
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 576 CATGGTAAAGACCAGCTTTTACCTTCTTCGGTTGTTGGAGATGGGGGTGCAAGTTGGAGA 635
Query 489 ATGAAAGCACTCAAACGTGC-AAAGGAACAGGCTGCGAGAGAAGGCCAAAGGCTTGAGGA 547
|||||||||||||| ||||| |||| ||||||||||||||||||| | ||||||||||||
Sbjct 636 ATGAAAGCACTCAAGCGTGCGAAAG-AACAGGCTGCGAGAGAAGGGCTAAGGCTTGAGGA 694
Query 548 TGTTGCTGGAGAGCGATGGGGTTCTCTTGGTAACCTTGTTGAGTCTGTGGCATCTCAAAG 607
|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 695 GGTTGCTGGCGAGCGATATGGTTCTCTTGGTAACCTTGTTGAGTCTGTCGCATCTCAAAG 754
Query 608 AGCAGCTCCATCTCGTGCGCATTTGAATGCCATAAATAACAGAAGAAGAGGGGAAAATGA 667
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 755 AGCAGCTCCATCTCGTGCCCATTTGAATGCCATAAATAATAGAAGAAGAGGGGAAAATGA 814
Query 668 AAAGAATGATACAGaaaaaaaaCCA---GAAAGAATTTCTGAGAAGGGTAATGATCGGGA 724
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 815 AAAGAATGATTCAGAAAAAAAACCAAAAGAAAGAATTTCTGAGAAGGGTAATAATCGGGA 874
Query 725 GTATTTGAAAGGTGACTCGTTGAACCATCGTGTATTGAGAGCCCCCAAAACTGACCCTTC 784
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 875 GTATTTGAAAGGTGAGTCGTTGAACCATCGTGTATTGAGAGCCCCCAAAACCGACCCTTC 934
Query 785 ATTATCTTGGGGAAAGAGAAAGAACCAAACTCATAGAAACGAAGACTCGAGGCTGATATC 844
||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 935 TTTATCCTGGGGAAAGAGAAAGAGCCAAACTCATAGAAACGAAGACTCGAAGCTGATATC 994
Query 845 TGAAGCTGCAGCTCACTTGAATAAGTTTTCCAATGACGGGAATTTCATGAAGGAAATGCT 904
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 995 TGAAGCTGCAGCTCACATGAATAAGTTTTCCAATGACGGAAATTTCATGAAGGAAATGCT 1054
Query 905 TTCTAAGCAAAAGAATGTATCAGTGTCTCCCGTAGAGACTCGTGGAGATCACAGAAATGA 964
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1055 TTCTAAGCAGAAGAATGTATCAGTGTCTCCCGTAGAGACTCGTGGAGATCACAGAAGTGA 1114
Query 965 TGTGGAGCAGAAAGCATTACCGTCAGAGACCAATAAGGATGGTGAAGGGACTCTTCCAAG 1024
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1115 TGTGGAGCAGGAAGCATTACCGTCAGAGACCAATAAGGATGACGAAGGGACTCTTCCGAG 1174
Query 1025 TATGGAAACCTTAAGTGTGAATAAACTGGCTGCTAAAGCCTTCCAGCTCCGTATGAAAGG 1084
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1175 TATGGAAAATTTAAGTGTGAATAAACTGGCTGCTAAAGCCTTACAGCTCCGTATGAAGGG 1234
Query 1085 GAAACATGAAGAAGCCCAGAAACTTATGGAAGAAGCAGAGAGGCTGAAAGCAGAACAAGC 1144
|||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||
Sbjct 1235 GAAACATGAAGAAGCCCAGAAAATTATGGAAGAAGCGGAAAGGCTGAAAGCAAAACAAGC 1294
Query 1145 TGGTGGAGACGATTCATCCAAAGACCAC---TCCATCAGAACCGCAGTGAGATATCCTGT 1201
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1295 TGTTGGAGACGATTCATCCAAAGACCACCACTCCATCAGAACCGCAGTGAGATATCCTGT 1354
Query 1202 CAAAGATATGTCGGGTAGAAGGAAGAATGAAGATGATAATACGGATATGCATCTAGCCAA 1261
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1355 CAAAGATATGTCGGGTAGAAGGAAGAATGAAGATGATA---CGGATATGCATCTAGCCAA 1411
Query 1262 GAGCATAATGCAGAACAAACAGTACAAAACATCTAATCAAGCTGCTGATGATGAGTATGA 1321
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1412 GAGCATAATGCAGAACAAACAGTACAAAACATCGAATCAAGCTGCTGATGATGAGTATGA 1471
Query 1322 ATACGGAGACGCTCCAAGCAAAAAGTCCCGGAAGCGGGAATCGTCCAGTAACATTCCTGA 1381
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1472 ATATGGAGACGCTCCAAGCAAAAAGTCCCGGAAGCGGGAATCGTCAAGTAACATTCCTGA 1531
Query 1382 AAAGGATAACCGTGTGAAACGTATTATGACTCAACAAGAACGCTGTCTCTTCTGTTTTGA 1441
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1532 AAAGGACAACCGTGTGAAACGTATTATGACCCAGCAAGAACGCTGTCTCTTCTGTTTTGA 1591
Query 1442 GAACCCAAAGCGGCCGAAACATTTAGTTGTGTCCATTGCAAACTTCACCTATCTGATGTT 1501
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1592 GAACCCAAAGCGGCCGAAACATTTAGTTGTGTCCATTGCCAACTTCACCTATCTGATGTT 1651
Query 1502 ACCACAACATCAGCCTCTTGTCCCAGGCCATTGCTGTATCTTGCCAATGCAGCACGAGGC 1561
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1652 ACCACAACATCAGCCCCTTGTCCAAGGCCATTGCTGTATCTTGCCAATGCAGCACGAGGC 1711
Query 1562 AGCCAGCAGAAGTGTTGACGACAATGTTTGGGACGAAATTCGTAATTTCAAGAAGTGTCT 1621
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1712 AGCCAGCAGAAGTGTTGACGACAATGTTTGGGACGAGATTCGTAATTTCAAAAAGTGTCT 1771
Query 1622 TATAATGATGTATGCAAAAGAAGGAAAAGACGCAGTGTTTCTGGAGACAGTGATAGGTTT 1681
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1772 TATAATGATGTATGCAAAAGAAGGAAAAGACGCAGTGTTTCTGGAGACAGTGATTGGTTT 1831
Query 1682 GTCTCAGCAACGTCGCCACTGTTTGATCGAGTGTATCCCAATCCCCCAGGAGATAGCAAA 1741
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1832 GTCTCAGCAACGTCGCCACTGTTTGATCGAGTGTATCCCAATCCCCCAAGAGATAGCAAA 1891
Query 1742 AGAAGGTCCACTATACTTCAAGAAGGCGATTGATGAAGCGGAAAGTGAATGGAGTCAGCA 1801
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1892 AGAAGGTCCTTTATACTTCAAGAAGGCGATCGATGAAGCGGAAAGTGAATGGAGTCAGCA 1951
Query 1802 CAATGCAAAGAAGCTCATAGACACTAGCGT-AAAGGGTCTGAGAAACTCTATACCCAAGA 1860
|||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||| ||||
Sbjct 1952 CAATGCGAAGAAGCTCATAGACACTAGCGTGAAAGG-TCTGAGGAACTCTATACCGAAGA 2010
Query 1861 ATTTCCCTTACTTCCACGTTGAGTTTGGTCTAGACAAAGGGTTTGTTCACGTGATTGATG 1920
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2011 ATTTCCCTTACTTCCACGTTGAGTTTGGTTTAGACAAAGGGTTTGTTCACGTGATTGATG 2070
Query 1921 ATGAACAACAGTTCAATAGCAATCTTGGACTAAATGTTATCAGAGGAATGCTCGAGTTAC 1980
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2071 ATGAACAACAGTTCAATAGCAATCTTGGACTAAATGTAATCAGAGGAATGCTCGAGTTAC 2130
Query 1981 CAGAAGAAGACATGTACAGACGAAGAAGGCAGGAGTCGGTAGAGAGCCAGAAGAAGGCGG 2040
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2131 CAGAAGAAGATATGTATAGACGTAGAAGGCAGGAGTCGGTGGAGAGCCAGAAGAAGGCGG 2190
Query 2041 TTGTGAGCTTTGCTCGCGAATGGGAACACTTTGATTGGACTAAACAACTTGATTA 2095
||| || |||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2191 TTGCGACCTTTGCCCGCGAATGGGAACACTTTGATTGGACGAAACAGCTTGATTA 2245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104919139050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5