BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924310
Length=230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B |... 329 5e-90
> AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B
| secretion-associated RAS 1B | chr1:21086555-21088549 REVERSE
LENGTH=943
Length=943
Score = 329 bits (178), Expect = 5e-90
Identities = 205/217 (94%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 1 GAGCTAAAAGATTTGTGATT---GATGTCACATCCTTCCCTTAGAAGACTT--GAACACt 55
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 727 GAGCTAAAAGATTTGTGATTGACGATGTCACATCCTTCCCTTAGAAGACTTGAGAACACT 786
Query 56 tttttctcttatttgttctttttgttgttttctGTGTTAAACATAAGTTTGGTGGCTTGC 115
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 787 TTTTTCTCATATTTGTTCTTTTTGTTGTTTTCTGTGTGGAACATAAGTTTGGTGGCTTGC 846
Query 116 ATTTCCAAACTTATTCATGCCTCTCGTCCACATTTTTGTCAACTGCTTATGTTTCATTGA 175
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 847 ATTTCCAAACTTATTCATTTCTCTTGTCCACATTTTTGTCAACTGCTTATGTTTCATTGA 906
Query 176 ACATTATTCCCAAGTTAGACCACCAACTCTTTTGAAC 212
|||||||||||||||||||||||||||| ||||||||
Sbjct 907 ACATTATTCCCAAGTTAGACCACCAACTTTTTTGAAC 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10355156294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5