BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924323

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56415.1 | Symbols:  | Expressed protein | chr1:21119829-211...   309    1e-83


> AT1G56415.1 | Symbols:  | Expressed protein | chr1:21119829-21120395 
FORWARD LENGTH=466
Length=466

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 240/274 (88%), Gaps = 9/274 (3%)
 Strand=Plus/Plus

Query  20   AAAAATGGTGAGTATCATGAAGATAATGATGATTATAGCTCTGTTAGTGATTGGCGTGAG  79
            ||||||||||||||||||||||||||||||||| || | | |||||||| ||||||| ||
Sbjct  63   AAAAATGGTGAGTATCATGAAGATAATGATGATCATGGTTTTGTTAGTGGTTGGCGTCAG  122

Query  80   TGCAAAGACTGTGGAACAATGTAAACGAACAACGTGTGAGACTAAATGTCATGACAGCAA  139
            ||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||
Sbjct  123  TGCAAAGACGGTGGAAGAATGTAAACGAACAACGTGCGCGACTAAATGTCGTGACAGCAA  182

Query  140  AAGTTTTGGTTGTTCTGATTGTCTCCTTCGAT-GCGCTTTTCCTGGAAGTGACAGTAAAA  198
            |||||||| ||||||||||||| || ||| || ||||||||||||||||||| || ||||
Sbjct  183  AAGTTTTGCTTGTTCTGATTGTATCATTC-ATTGCGCTTTTCCTGGAAGTGAAAGCAAAA  241

Query  199  TA-GATCAAC---GGGCTTTGTGTATCAAGAATTGTGATGTCGGTTGTGGCCCGAGCCAG  254
            || | |||||   ||||||||||| ||| ||||||||||||||| ||| |||| ||| | 
Sbjct  242  TAAG-TCAACCACGGGCTTTGTGTCTCAGGAATTGTGATGTCGGATGTCGCCCAAGCAAC  300

Query  255  GAC-TGCTACCAACGTTGTATTAAACGTTGTCCT  287
             || ||||||||||||||||||||||  ||||||
Sbjct  301  -ACCTGCTACCAACGTTGTATTAAACACTGTCCT  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5