BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924337
Length=451
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:29... 540 5e-153
AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:32... 460 4e-129
AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:32... 453 6e-127
AT5G65360.1 | Symbols: | Histone superfamily protein | chr5:26... 416 8e-116
AT3G27360.1 | Symbols: | Histone superfamily protein | chr3:10... 388 2e-107
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 233 9e-61
AT5G12910.1 | Symbols: | Histone superfamily protein | chr5:40... 165 3e-40
> AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:2971593-2972199
REVERSE LENGTH=607
Length=607
Score = 540 bits (292), Expect = 5e-153
Identities = 383/428 (89%), Gaps = 2/428 (0%)
Strand=Plus/Plus
Query 21 ATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAA-GCACCAAGGAAGCA 79
|||||||||||||||||||| |||||||||||||| ||||| ||| || |||||||||||
Sbjct 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGG-AAAGGCTCCAAGGAAGCA 126
Query 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 127 GCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACA 186
Query 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
|||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 187 CAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGA 246
Query 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATTGCTCAAGACTTCAA 259
|||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 247 GCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGTCAGAGAGATCGCTCAGGACTTCAA 306
Query 260 GACTGATCTCCGTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCTTA 319
|| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 307 AACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGCTTA 366
Query 320 CCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACTAT 379
||| || |||||||| |||||||| ||||| || || ||||| || ||||| || || ||
Sbjct 367 CCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACGAT 426
Query 380 CATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTAGATCTAAAT 439
|||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 427 CATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTTAGATCTAAGT 486
Query 440 ATTCTGGT 447
||||||||
Sbjct 487 ATTCTGGT 494
> AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:3270289-3270952
REVERSE LENGTH=664
Length=664
Score = 460 bits (249), Expect = 4e-129
Identities = 359/413 (87%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAA-GCACCAAGGAAGC 78
|||||||||||||||||| |||||| | ||||| || ||||| ||| |||||||||||||
Sbjct 64 AATGGCTCGTACCAAGCAAACAGCTCGTAAATCCACCGGAGG-AAAGGCACCAAGGAAGC 122
Query 79 AATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTC 138
|| | || || ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 123 AACTCGCGACCAAAGCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCAC 182
Query 139 ACAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTG 198
|||||||| | || ||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 183 ACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTACTG 242
Query 199 AGCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTC 257
||||| |||||||||| ||||| |||||||| ||| | | |||||||||||||| |||
Sbjct 243 AGCTTTTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTCGTGAGATTGCTCAAGATTTC 301
Query 258 AAGACTGATCTCCGTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCT 317
||||| ||||| | |||||||| ||||| || || |||||||||||||| ||||| |||
Sbjct 302 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTTCAGGAAGCAGCTGAGGCT 361
Query 318 TACCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACT 377
|| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| |||||
Sbjct 362 TATCTTGTTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTACG 421
Query 378 ATCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTA 430
|| |||||||||||||||||||| ||||| ||||| |||||||| || |||||
Sbjct 422 ATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTTA 474
> AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:3268847-3269550
REVERSE LENGTH=704
Length=704
Score = 453 bits (245), Expect = 6e-127
Identities = 357/412 (87%), Gaps = 4/412 (1%)
Strand=Plus/Plus
Query 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
|||||||||||| ||||| || || |||||||| |||||||||||||||||||| |||||
Sbjct 75 AATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCAAGAAAGCA 134
Query 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
| | ||||| || || || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 135 ACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCA 194
Query 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
|||||| | || ||||| || || || ||||| ||||||||||||||||||||||||||
Sbjct 195 TAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTATCAGAAGAGCACTGA 254
Query 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATTGCTCAAGACTTCAA 259
||||||||||||||| |||||||||||| | || || | ||||| ||||| || |||||
Sbjct 255 GCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATAGCTCAGGATTTCAA 314
Query 260 GACTGATCTCCG-TTTCCAGAGTAGTGCTGTTGCTGCTCTT-CAGGAAGCTGCTGAAGCT 317
||| ||||| | |||| |||| ||||||||||||||| || || || |||||||| |||
Sbjct 315 GACGGATCTGAGGTTTC-AGAGCAGTGCTGTTGCTGCT-TTACAAGAGGCTGCTGAGGCT 372
Query 318 TACCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACT 377
||||||||||| | |||||||||||||||||||| || ||||| |||||||| || ||
Sbjct 373 TACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAGAGGGTCACC 432
Query 378 ATCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTT 429
||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 433 ATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCTT 484
> AT5G65360.1 | Symbols: | Histone superfamily protein | chr5:26119859-26120581
REVERSE LENGTH=723
Length=723
Score = 416 bits (225), Expect = 8e-116
Identities = 350/412 (85%), Gaps = 2/412 (0%)
Strand=Plus/Plus
Query 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
|||||||||||||||||| || || |||||||| || ||||| ||||| |||||||| ||
Sbjct 72 AATGGCTCGTACCAAGCAAACCGCAAGGAAATCCACCGGAGGAAAAGCCCCAAGGAAACA 131
Query 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
| | |||||||| || ||||||||||| ||||| || ||||||||||| |||||||| ||
Sbjct 132 ACTCGCAACAAAGGCGGCGAGGAAATCAGCTCCGGCGACCGGAGGAGTAAAGAAGCCACA 191
Query 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 192 CAGATTCCGTCCTGGAACTGTTGCCCTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 251
Query 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTCA 258
|||||||||||| || ||||| |||||| | ||| | | ||||| ||||| || ||||
Sbjct 252 GCTTCTGATCCGCAAGCTTCCGTTCCAGCGT-TTGGTTCGTGAGATCGCTCAGGATTTCA 310
Query 259 AGACTGATCTCCGTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCTT 318
| || ||||| ||||||||||| || || || || || ||||||||||| |||||||| |
Sbjct 311 AAACAGATCTGCGTTTCCAGAGCAGCGCCGTCGCAGCACTTCAGGAAGCGGCTGAAGCAT 370
Query 319 ACCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACTA 378
|||| |||||| | ||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct 371 ACCTCGTTGGATTGTTTGAAGACACCAATCTTTGCGCGATTCATGCTAAGAGAGTCACTA 430
Query 379 TCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTA 430
|||||||||||||||| || | ||||| ||||||||||| || || |||||
Sbjct 431 TCATGCCTAAGGATATTCAATTGGCGAGGAGAATTAGAGGCGAGAGGGCTTA 482
> AT3G27360.1 | Symbols: | Histone superfamily protein | chr3:10129105-10129937
REVERSE LENGTH=833
Length=833
Score = 388 bits (210), Expect = 2e-107
Identities = 350/418 (84%), Gaps = 7/418 (2%)
Strand=Plus/Plus
Query 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
||||||| | || ||||| |||||||| ||||| || ||||| ||||| || || |||||
Sbjct 68 AATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCA 127
Query 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
| | || || |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 128 ACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACA 187
Query 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
||||||| | || ||||| || || ||| | |||||||| |||||||| || ||||| ||
Sbjct 188 CAGATTCCGTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGA 247
Query 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTCA 258
|||| |||||||||| |||||||||||||| ||| | | ||||| |||||||| ||||
Sbjct 248 GCTTTTGATCCGTAAGCTTCCTTTCCAGAGA-TTGGTTCGTGAGATAGCTCAAGATTTCA 306
Query 259 AGACTGATCTCCG-TTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCT 317
|||| ||||| | |||| |||||||||| || || |||||||| ||||| |||||||||
Sbjct 307 AGACGGATCTTAGGTTTC-AGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCT 365
Query 318 TACCTTG-TTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTAC 376
|| ||| ||||| | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 366 TAT-TTGGTTGGATTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTAC 424
Query 377 TATCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTA-GAT 433
|| |||||||||||||| || || ||||| || |||||||| || || ||||| |||
Sbjct 425 GATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAAGAT 482
> AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10129610-10132760 REVERSE LENGTH=2424
Length=2424
Score = 233 bits (126), Expect = 9e-61
Identities = 209/250 (84%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
||||||| | || ||||| |||||||| ||||| || ||||| ||||| || || |||||
Sbjct 2164 AATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCA 2223
Query 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
| | || || |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2224 ACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACA 2283
Query 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
||||||| | || ||||| || || ||| | |||||||| |||||||| || ||||| ||
Sbjct 2284 CAGATTCCGTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGA 2343
Query 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTCA 258
|||| |||||||||| |||||||||||||| ||| | | ||||| |||||||| ||||
Sbjct 2344 GCTTTTGATCCGTAAGCTTCCTTTCCAGAGA-TTGGTTCGTGAGATAGCTCAAGATTTCA 2402
Query 259 AGACTGATCT 268
|||| |||||
Sbjct 2403 AGACGGATCT 2412
> AT5G12910.1 | Symbols: | Histone superfamily protein | chr5:4077162-4077557
FORWARD LENGTH=396
Length=396
Score = 165 bits (89), Expect = 3e-40
Identities = 201/255 (79%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 153 GGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGAGCTT-CTGATCCG 211
||||| ||||| | || || ||||||||||| ||||||| ||| || ||| | || |
Sbjct 118 GGAACAGTGGCACTCAGGGAGATCAGGAAGTACCAGAAGACCACAGA-CTTAGTTATAAG 176
Query 212 TAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATTGCTCAAGACT-TCAAGACTGATCTCC 270
||||| |||||||| || || |||| |||||| |||| ||| | ||||| | |||||
Sbjct 177 AAAACTCCCTTTCCAAAGACTGGTGAAAGAGATAGCTC-AGAGTCTCAAGGCAGATCTAA 235
Query 271 GTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCTTACCTTGTTGGAC 330
| ||||||| |||||||| | |||||||| ||||| |||||||||| | ||||||
Sbjct 236 GGTTCCAGACCGGTGCTGTTTCCGCTCTTCAAGAAGCCGCTGAAGCTTTTATGGTTGGAA 295
Query 331 TCTTTGAAGACACTAATCTT-TGTGCTATTCATGCTAAGAGAGT-TACTATCATGCCTAA 388
| ||||| ||||| ||| || ||||| || ||||| || ||| | ||||||||||||||
Sbjct 296 TGTTTGAGGACACCAAT-TTGTGTGCCATGCATGCCAAAAGA-TCAACTATCATGCCTAA 353
Query 389 GGATATCCAGCTCGC 403
|||||||||||||||
Sbjct 354 GGATATCCAGCTCGC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21464328823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5