BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924338
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:179... 281 2e-75
AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087... 244 3e-64
AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin ... 231 2e-60
> AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:17908945-17909507
REVERSE LENGTH=453
Length=453
Score = 281 bits (152), Expect = 2e-75
Identities = 237/277 (86%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 12 AGT-TATTAGTCATGGCTAAGCT-TGCTACCATCATCATCACGGTT-ATCTTCGCTGCTC 68
||| || |||||||||||||| | |||||||||||||| | | || | ||||||||||
Sbjct 52 AGTATAATAGTCATGGCTAAG-TCTGCTACCATCATCA-C-C--TTCCTTTTCGCTGCTC 106
Query 69 TTGTTCTCTTTGCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAAAAGTTGTGCGAGA 128
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 107 TTGTTCTCTTTGCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGA 166
Query 129 GGCTTAGTGGTACAACGTTGGGAGTCTGCGGAAACAGTAATGCGTGCAAGAATCGGTGCA 188
|| ||||| ||| || || || ||||||||||||||||| |||||||||| |||||
Sbjct 167 AGCCAAGTGGGACATGGTCAGGCGTTTGCGGAAACAGTAATGCATGCAAGAATCAGTGCA 226
Query 189 TTCTAC-TGGAGGGAGCACGACATGGTTCTTGCAACTTTATCTTCCCATATCACAGATGT 247
|| || | ||||||||| |||||| |||||||||| | |||||||| ||||| ||||
Sbjct 227 TTA-ACCTTGAGGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGT 285
Query 248 GTCTGTTACTTCCCATGTTAATTTACCAAAAAACTTT 284
|||||||| |||||||||||| ||||||||| ||||
Sbjct 286 ATCTGTTACGTCCCATGTTAATCTACCAAAAATCTTT 322
> AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087348-11087944
FORWARD LENGTH=495
Length=495
Score = 244 bits (132), Expect = 3e-64
Identities = 226/270 (84%), Gaps = 12/270 (4%)
Strand=Plus/Plus
Query 12 AGTTAT-TAGTCATGGCTAAGCT-TGCTACCATCATCATCACGGTT-ATCTTCGCTGCTC 68
||| || || ||||||||||| | |||| | ||||||||| || ||||||||||||
Sbjct 52 AGTAATATAATCATGGCTAAG-TCTGCT-GC--CATCATCAC-TTTCCTCTTCGCTGCTC 106
Query 69 TTGTTCTCTTTGCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAAAAGTTGTGCGAGA 128
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 107 TTGTTCTCTTTGCTGCTTTTGAAGCACCGATAATGGTGGAAGCACAGAAGTTGTGCGAGA 166
Query 129 GGCTTAGTGGTACAACGTTGGGAGTCTGCGGAAACAGTAATGCGTGCAAGAATCGGTGCA 188
|| |||||||| || ||||| ||||||||||| |||||||||||||||| |||||
Sbjct 167 AGCCAAGTGGTACTTGGTCAGGAGTTTGCGGAAACAGCAATGCGTGCAAGAATCAGTGCA 226
Query 189 TTCTAC-TGGAGGGAGCACGACATGGTTCTTGCAACTTTATCTTCCCATATCACA-GATG 246
|| || | ||||| ||| |||||| |||||||||| | |||||||| ||||| | ||
Sbjct 227 TTA-ACCTTGAGGGGGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAG-TG 284
Query 247 TGTCTGTTACTTCCCATGTTAATTTACCAA 276
| |||||||||||||||||||| ||||||
Sbjct 285 TATCTGTTACTTCCCATGTTAAGCTACCAA 314
> AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin
1.2 | chr5:17907069-17907598 REVERSE LENGTH=438
Length=438
Score = 231 bits (125), Expect = 2e-60
Identities = 224/270 (83%), Gaps = 14/270 (5%)
Strand=Plus/Plus
Query 21 TCATGGCTAAGCTTGCTACCATCATCATCACGGTTATCTTCGCTGCTCTTGTTCTCTTTG 80
||||||||||| ||||| ||||||||| | | |||||||||||||||||||||||||||
Sbjct 47 TCATGGCTAAGTTTGCTTCCATCATCA-C-C-CTTATCTTCGCTGCTCTTGTTCTCTTTG 103
Query 81 CTGCTTTTGAAGCACCAACAATGGTGGAAGCACAAAAGTTGTGCGAGAGGCTTAGTGGTA 140
||||||| || ||||| |||||||||||||||| ||||||||||||| || ||||| |
Sbjct 104 CTGCTTTCGACGCACCGGCAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGGA 163
Query 141 CAACGTT-GGGAGTCTGCGGAAACAGTAATGCGTGCAAGAATCGGTGCATTCTAC-TGGA 198
|| || ||| || ||||||||||||||||| |||||||||| ||||||| || | ||
Sbjct 164 CATGGTCAGGG-GTTTGCGGAAACAGTAATGCATGCAAGAATCAGTGCATTA-ACCTTGA 221
Query 199 GGGAGCACGA-CATGGTTCTTGCAACTTTATCTTCCCAT-ATCACA-GATGTGTCTGTTA 255
||||| | | ||||| || ||||||| | |||||||| | |||| | ||| |||||||
Sbjct 222 AGGAGC-CAAACATGGATCATGCAACTATGTCTTCCCAGCA-CACAAG-TGTATCTGTTA 278
Query 256 CTTCCCATGTTAATT-TACCAAAAAACTTT 284
| ||||||||||| | |||||| || ||||
Sbjct 279 CGTCCCATGTTAAATCTACCAATAATCTTT 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13371221234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5