BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924339
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56480.1 | Symbols: | pseudogene, pectinesterase, blastp ma... 388 5e-107
> AT1G56480.1 | Symbols: | pseudogene, pectinesterase, blastp
match of 65% identity and 9.5e-47 P-value to GP|14495216|dbj|BAB60935.1||AP003578
putative pectin methylesterase {Oryza
sativa (japonica cultivar-group)} | chr1:21150293-21152844 REVERSE
LENGTH=2552
Length=2552
Score = 388 bits (210), Expect = 5e-107
Identities = 258/281 (92%), Gaps = 3/281 (1%)
Strand=Plus/Plus
Query 631 AATTGTGTGATATACGTTAAAGGAGTGACATCAAAGAAAATGACGAAGGAAGGAGGAATG 690
|||||||||||| ||||||||| ||||||||||||| |||| |||| |||||||||||
Sbjct 1812 AATTGTGTGATAAACGTTAAAGCAGTGACATCAAAGCGCATGATGAAGAAAGGAGGAATG 1871
Query 691 TTAGAAGGATACATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTG 750
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 TTAGAAGGGTTCATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTG 1931
Query 751 TTCAAAAATTGTTTGATTCAAGGAGATGGTAAGGCATATTTAGGAAGAGCTTACCGAAAC 810
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 TTCAAACATTGTGTGATTCAAGGAGATGGTAAGGCATATTTAGGAAGAGCTTACCGAAAC 1991
Query 811 TACTCTAGAGTTGTTTTCTATGGAACCAACATGTCCAATGTTGTCGTACCTCGAGGATGG 870
|||||||||||||| ||||||| ||||| |||||||||||||||||||| | |||||||
Sbjct 1992 TACTCTAGAGTTGTCTTCTATGAAACCACCATGTCCAATGTTGTCGTACGTAAAGGATGG 2051
Query 871 GATGCTTGGGATTATAACGACCAAGTGCA--TAA-ATTTAC 908
||||||||||| |||| |||||||||| | ||| ||||||
Sbjct 2052 GATGCTTGGGAATATAGCGACCAAGTGTACGTAATATTTAC 2092
Score = 370 bits (200), Expect = 2e-101
Identities = 222/233 (95%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 22 ATGAAATCTCTTAAAACTATTTTGGCTCTCTCATTTATGTATTTTACGGCTACGACATCA 81
|||||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1 ATGAAATCTCTTAAAAATATTTTGGCTCTCTCATTTTTGTATTTGATGGCTACGACATCA 60
Query 82 CTTGTATCTTCTTATGGTTTGGAACCGAAAGATTTCTACAAAGATATAGCAAAGACATTG 141
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTATCTTCAGATGGTTTGGAACCGAAAGATTTCTACAAAGATATAGCAAAGACATTG 120
Query 142 GTGGTTAGTCATAATGGTAAAGGTGATTTCAAAACCATCCAAGCAGCCATGGACTCTATT 201
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGGTTAGTCATAAGGGTAAAGGTGATTTCAAAACCATCCAAGCAGCCATGGACTCTATT 180
Query 202 CCTTCTAGTAACAAAAATTGGATTAAGATTTATCTTAAACATGGAACCTACAA 254
|||||| |||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 181 CCTTCTGGTAACAAAAATTGGGTTAAGATTTATCTTAGACATGGAATCTACAA 233
Score = 320 bits (173), Expect = 2e-86
Identities = 204/219 (93%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 413 AGAATACGAATACAAGGATGACACCAATAATACCATATAAAGCGATAAAGGTAGCTCCAT 472
|||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||
Sbjct 1325 AGAATACGAATACAAGGATGACACCAGTTATACCGTATAAAGCAATAAAGGTAGCTCCAT 1384
Query 473 CAATTATATTAGCCGCGGACAAGGCATGGTTCTATGGCTGCACCTTCATCAGTGTCCAAG 532
|| ||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1385 CAGTTATACTAGCTGCGGACAAGGCGTGGTTCTATGGCTGCAGCTTCATCAGTGTCCAAG 1444
Query 533 ACACAGTCGCTGATTTACTCGGCCGCCATTACTT-TATAAATTGTTACATCGTAGGAGCC 591
|||||||||||||||||||||||||||| ||||| | ||||||| |||| |||||||||
Sbjct 1445 ACACAGTCGCTGATTTACTCGGCCGCCACTACTTCCA-AAATTGTAACATTGTAGGAGCC 1503
Query 592 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 630
|||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 1542
Score = 285 bits (154), Expect = 6e-76
Identities = 171/179 (96%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 899 ATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAATAAGAAAGGAAGAG 958
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2187 ATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAGTAAGAAAGGAAGAG 2246
Query 959 TTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTAAAT-TACTTATTGAACCCAAAAAT 1017
||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||
Sbjct 2247 TTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTGAATCT-CTTATAGAACCAAAAAAT 2305
Query 1018 TTCATTGATGAAGATGGTTGGATGGCCACTCTTCCTTCTTCTCTCGTCTCTTTAttttt 1076
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2306 TTCATTGATGAAGATGGTTGGATAGCCACTCTTCCTTCTTCTCTCGTCTCTTTATATTT 2364
Score = 268 bits (145), Expect = 6e-71
Identities = 155/160 (97%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 255 CGAAAAGATAGTAATTCCGAAGGAGAAACAAAAGATAATAATGCAAGGAAACAATGCATC 314
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 323 CGAAAAGATAGTGATTCCGAAGGAGAAGCAAAAGATAATAATGCAAGGAAACAATGCATC 382
Query 315 AAAAGTGATAATTCAATATAATGATGCAGGACTAGCCAATACGAGTGGTCCTATAAGAGT 374
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 383 AAAAGTGATAATTCAATATAATGATGCAGGACTAGCCAATTCGAGTGGTCCTTTAAGAGT 442
Query 375 AGACGCCGAATACTTCGTCGCTATCAACATTACTTTCAAG 414
|||||| |||||||||||||||||||||||||||||||||
Sbjct 443 AGACGCTGAATACTTCGTCGCTATCAACATTACTTTCAAG 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5