BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924340

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59990.1 | Symbols: MAP2B | methionine aminopeptidase 2B | c...   468    2e-131


> AT3G59990.1 | Symbols: MAP2B | methionine aminopeptidase 2B | 
chr3:22155719-22158730 REVERSE LENGTH=1621
Length=1621

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 293/312 (94%), Gaps = 4/312 (1%)
 Strand=Plus/Plus

Query  1    GGTGAGAATCGAATTTGAAGATGGCGAGCGAAAGCCCTGATGTTGTTGTTGTAGCTCCCG  60
            ||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct  81   GGTGAAAATCG-ATTTGAAGATGGCGAGCGAAAGTCCTGATGTTGCTGTTGTAGCTCCGG  139

Query  61   TGGTGGAGAATGGCGGCGCTGAATCCTCTAATGGAAAAGATGAACAATTGGAATCTGAGC  120
            |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct  140  TGGTGGAGAATGGCGGCGCTGAGTCCTCTAATGGTAAAGAGGAACAATTGGAATCTGAGC  199

Query  121  TTTCGAAGAAGCTTGAGATTGCAGAAGATGGTAAAGAGGACAACGATgaagatgaaggaa  180
            |||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||
Sbjct  200  TTTCGAAGAAGCTTGAGATTGCAGAAGATGGTCAAGAGGAGAACGATGGAGAAGAAGGAA  259

Query  181  gcaaaggtgagacttcaac---gaagaagaagaagaaaaataaaagcaagaagaagaagG  237
            |||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct  260  GCAAAGCTGAGACTTCAACGAAGAAGAAGAAGAAGAAAAATAAAAGCAAGAAGAAGAAGG  319

Query  238  AACTCCCTCAACAGACTAATCCACCTTCGATTCCTGTCGTTGAGCTCTTCCCATCTGGAG  297
            ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct  320  AACTCCCTCAACAGACTGATCCACCTTCAATTCCTGTCGTTGAGCTCTTCCCATCAGGAG  379

Query  298  AGTTTCCTGAAG  309
            ||||||||||||
Sbjct  380  AGTTTCCTGAAG  391


 Score =  139 bits (75),  Expect = 2e-32
 Identities = 81/84 (96%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  304  CTGAAGAGAAGAGAGAGTTGGAGCGTTTGGAAAAGCCAATATATAACTCTGTTCGCCAAG  363
            ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||
Sbjct  437  CTGAAGAGAAGAGAGAGCTGGAGCGTTTTGAAAAGCCAATATATAACTCTGTTCGCCGAG  496

Query  364  CTGCAGAAGTTCATCGCCAGGTTC  387
            ||||||||||||||||||||||||
Sbjct  497  CTGCAGAAGTTCATCGCCAGGTTC  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20308170596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5