BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924341 Length=1123 Score E Sequences producing significant alignments: (Bits) Value AT1G56490.1 | Symbols: | pseudogene, pectinesterase, blastp ma... 383 2e-105 AT1G56480.1 | Symbols: | pseudogene, pectinesterase, blastp ma... 274 1e-72 > AT1G56490.1 | Symbols: | pseudogene, pectinesterase, blastp match of 38% identity and 1.5e-56 P-value to GP|14495216|dbj|BAB60935.1||AP003578 putative pectin methylesterase {Oryza sativa (japonica cultivar-group)} | chr1:21155295-21157567 REVERSE LENGTH=2273 Length=2273 Score = 383 bits (207), Expect = 2e-105 Identities = 247/266 (93%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 630 AACTGCATTATACACGTTAAAAGAGTGGCAACAAAGGGAATGCTGAAGAGAGAACAAATG 689 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1710 AACTGCATTATACACGTTAAAAGAGTGGCAACAAAGGGAAAGGTGAAGAGAGAACAAATG 1769 Query 690 TTAGCAGGATATATAACCGCGCAAGGGAGGGAAAGCGAAG-AAGACACAAGCGGATTTGT 748 ||| ||||||| |||||||| |||||||| |||||| ||| ||||| |||| |||||||| Sbjct 1770 TTAACAGGATACATAACCGCACAAGGGAGAGAAAGC-AAGGAAGACCCAAGTGGATTTGT 1828 Query 749 GTTCAATAATTGCGTGATTA-AAGGAAGTGGTAAGGCATTATTGGGAAGAGCTTACCGAG 807 |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 1829 GTTCAATAATTGCGTGAT-AGAAGGAAGTGGTAGGGCATTATTGGGAAGAGCTTACCGAG 1887 Query 808 ACTACTCTAGAGTTGTCTTCTATGAAACTAGCATGTCCAATATTATTGAAAGTCGAGGAT 867 |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| Sbjct 1888 GCTACTCTAGAGTTGTCTTCTATAAAACCAGCATGTCCAATATTATTGAACGTCGAGGAT 1947 Query 868 GGGATGCTTGGGATCGTGAAGGCCAA 893 ||||||||||| ||||| |||||||| Sbjct 1948 GGGATGCTTGGCATCGTCAAGGCCAA 1973 Score = 320 bits (173), Expect = 2e-86 Identities = 214/234 (91%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 21 ATGAGATCTCTTAAAAGTTTATTGGCTTTCTCATTTTTGTTCTTAACGGCTTCGTCGTTA 80 |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| | | Sbjct 1 ATGAAATCTCTTAAAAGTATATTGGCTCTCTCATTTTTGTTCTTAACGGCTTCGTCATCA 60 Query 81 CTTGTCTCTTCTTATCGTTTAGAACCAACA-GATTTCGTTGAAGATGTAGAAAAAACACT 139 ||| |||||||||| ||||||||||| || ||||||||||||||||||| ||||||||| Sbjct 61 TTTGGCTCTTCTTATGGTTTAGAACCA-CATGATTTCGTTGAAGATGTAGTAAAAACACT 119 Query 140 GGTGGTTGATCATGATGGTACAGCTAATTTCAAAACCATCCAAAAAGCCATCAACTCCAT 199 |||||||| |||||||||| || || |||||||||||||||||||||||||| ||||||| Sbjct 120 GGTGGTTGGTCATGATGGTGCAACTGATTTCAAAACCATCCAAAAAGCCATCGACTCCAT 179 Query 200 TCCCTCTGGTAACAATGATTGGATTAAAATAATTCTTAATCCTGGAATCTACCA 253 ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| Sbjct 180 TCCCTCTGGTAACAACCATTGGATTAAAATAATTATTAGTCCTGGAATCTACCA 233 Score = 305 bits (165), Expect = 5e-82 Identities = 186/196 (95%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 897 aaaaaaaa-CAGGGATCATTTTACATATGCGGAGATAAACTGCATAGGGGAAGGAGCGAA 955 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2066 AAAAAAAATCAGGGATCATTTTACATTTGCGGAGATAAACTGCAAAGGGGAAGGAGCGAA 2125 Query 956 TAAGAGCGGAAGAGTTCGATGGGAGAAGAATCTTACTGCTGAAGATGTTAAATCTCTTAT 1015 |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 2126 TAAGAGAGGAAGAGTTCGATGGGAGAAGAATCTTAGTGCTGAAGATGTTAAATCTCTGAC 2185 Query 1016 TGAACCCAAAACTTTCATTAATGGAGATGGTTGGATGGCTACTCTTCCTTCTTCTCTCGT 1075 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2186 TGAACCCAAAACTTTCCTTAATGGAGATGGTTGGATGGGTACTCTTCCTTCTTCTCTCGT 2245 Query 1076 CTCTTTATATTTACCA 1091 |||||||||||| ||| Sbjct 2246 CTCTTTATATTTGCCA 2261 Score = 215 bits (116), Expect = 8e-55 Identities = 144/158 (91%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 254 CGAAAAGATAGTGATTCCGATGGAAAAGCAAAAGATAATAATGCAAGGAAATGACGCATC 313 |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 646 CGAAAAGATAGTGATTCCGAGGGAGAAGCAAAAGATAATAATGCAAGGAAGCGACGCATC 705 Query 314 AAAAGTGATAATTCAATACAATGATGCAGGACTATCTAATTCGAGTGGTCCTTTCACACT 373 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | | Sbjct 706 AAAAGTGATAATTCAATACAATGATGCAGGACTATCTGCTTCGAGTGGTCCTTTAAGAGT 765 Query 374 AAACGCCGAGTACTTCGTAGCTATCAACATTACATTCA 411 | ||||||| ||||| || |||||||||||||| |||| Sbjct 766 AGACGCCGAATACTTTGTCGCTATCAACATTACTTTCA 803 > AT1G56480.1 | Symbols: | pseudogene, pectinesterase, blastp match of 65% identity and 9.5e-47 P-value to GP|14495216|dbj|BAB60935.1||AP003578 putative pectin methylesterase {Oryza sativa (japonica cultivar-group)} | chr1:21150293-21152844 REVERSE LENGTH=2552 Length=2552 Score = 274 bits (148), Expect = 1e-72 Identities = 196/219 (89%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 413 GAATACTTATAACAA-GAGGACACCAATAATACTATATGAAG-ATATAAAGGTAGCCCCA 470 |||||| || |||| || ||||||| | |||| ||| ||| | ||||||||||| ||| Sbjct 1326 GAATACGAAT-ACAAGGATGACACCAGTTATACCGTATAAAGCA-ATAAAGGTAGCTCCA 1383 Query 471 TCAGTTATACTAACGGCGGACAAGGCATGGTTCTATAGCTGCAGGTTCATCAGTGTCCAA 530 |||||||||||| | ||||||||||| ||||||||| ||||||| ||||||||||||||| Sbjct 1384 TCAGTTATACTAGCTGCGGACAAGGCGTGGTTCTATGGCTGCAGCTTCATCAGTGTCCAA 1443 Query 531 GACACAGTCGCTGATTTACTTGGCCGCCACTACTTCCAAAATTGTTACATCGAAGGAGCA 590 |||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||| Sbjct 1444 GACACAGTCGCTGATTTACTCGGCCGCCACTACTTCCAAAATTGTAACATTGTAGGAGCC 1503 Query 591 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 629 ||||||||||||||||||||||||||||||||||||||| Sbjct 1504 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 1542 Score = 255 bits (138), Expect = 5e-67 Identities = 174/192 (91%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 899 aaaaaaCAGGGATCATTTTACATATGCGGAGATAAACTGCATAGGGGAAGGAGCGAATAA 958 ||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2176 AAAAATCAGGGATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAGTAA 2235 Query 959 GAGCGGAAGAGTTCGATGGGAGAAGAATCTTACTGCTGAAGATGTTAAATCTCTTATTGA 1018 || ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| || Sbjct 2236 GAAAGGAAGAGTTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTGAATCTCTTATAGA 2295 Query 1019 ACCCAAAACTTTCATTAATGGAGATGGTTGGATGGCTACTCTTCCTTCTTCTCTCGTCTC 1078 ||| |||| ||||||| ||| |||||||||||| || ||||||||||||||||||||||| Sbjct 2296 ACCAAAAAATTTCATTGATGAAGATGGTTGGATAGCCACTCTTCCTTCTTCTCTCGTCTC 2355 Query 1079 TTTATATTTACC 1090 |||||||||||| Sbjct 2356 TTTATATTTACC 2367 Score = 231 bits (125), Expect = 8e-60 Identities = 208/247 (84%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 639 ATACACGTTAAAAG-AGTGGCAACAAAGGGAATGCTGAAGAGAGAACAAATGTTAGCAGG 697 ||| ||||| |||| |||| || ||||| | ||| |||||| || | |||||||| ||| Sbjct 1821 ATAAACGTT-AAAGCAGTGACATCAAAGCGCATGATGAAGAAAGGAGGAATGTTAGAAGG 1879 Query 698 ATAT-ATAACCGCGCAAGGGAGGGAAAGCGAAGAAGACACAAGCGGATTTGTGTTCAATA 756 | | |||||||| ||||||||||||||||| ||||||| ||| |||||||||||||| | Sbjct 1880 GT-TCATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTGTTCAA-A 1937 Query 757 -ATTGCGTGATTAAAGGAAG-TGGTAAGGCATTA-TTGGGAAGAGCTTACCGAGACTACT 813 |||| |||||| |||| || |||||||||| || || ||||||||||||||| |||||| Sbjct 1938 CATTGTGTGATTCAAGG-AGATGGTAAGGCA-TATTTAGGAAGAGCTTACCGAAACTACT 1995 Query 814 CTAGAGTTGTCTTCTATGAAACTAGCATGTCCAATATTATTGAAAGTCGAGGATGGGATG 873 |||||||||||||||||||||| | |||||||||| || | | | || ||||||||||| Sbjct 1996 CTAGAGTTGTCTTCTATGAAACCACCATGTCCAATGTTGTCGTACGTAAAGGATGGGATG 2055 Query 874 CTTGGGA 880 ||||||| Sbjct 2056 CTTGGGA 2062 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55069997865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5