BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924341
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56490.1 | Symbols: | pseudogene, pectinesterase, blastp ma... 383 2e-105
AT1G56480.1 | Symbols: | pseudogene, pectinesterase, blastp ma... 274 1e-72
> AT1G56490.1 | Symbols: | pseudogene, pectinesterase, blastp
match of 38% identity and 1.5e-56 P-value to GP|14495216|dbj|BAB60935.1||AP003578
putative pectin methylesterase {Oryza
sativa (japonica cultivar-group)} | chr1:21155295-21157567 REVERSE
LENGTH=2273
Length=2273
Score = 383 bits (207), Expect = 2e-105
Identities = 247/266 (93%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 630 AACTGCATTATACACGTTAAAAGAGTGGCAACAAAGGGAATGCTGAAGAGAGAACAAATG 689
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1710 AACTGCATTATACACGTTAAAAGAGTGGCAACAAAGGGAAAGGTGAAGAGAGAACAAATG 1769
Query 690 TTAGCAGGATATATAACCGCGCAAGGGAGGGAAAGCGAAG-AAGACACAAGCGGATTTGT 748
||| ||||||| |||||||| |||||||| |||||| ||| ||||| |||| ||||||||
Sbjct 1770 TTAACAGGATACATAACCGCACAAGGGAGAGAAAGC-AAGGAAGACCCAAGTGGATTTGT 1828
Query 749 GTTCAATAATTGCGTGATTA-AAGGAAGTGGTAAGGCATTATTGGGAAGAGCTTACCGAG 807
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1829 GTTCAATAATTGCGTGAT-AGAAGGAAGTGGTAGGGCATTATTGGGAAGAGCTTACCGAG 1887
Query 808 ACTACTCTAGAGTTGTCTTCTATGAAACTAGCATGTCCAATATTATTGAAAGTCGAGGAT 867
|||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 1888 GCTACTCTAGAGTTGTCTTCTATAAAACCAGCATGTCCAATATTATTGAACGTCGAGGAT 1947
Query 868 GGGATGCTTGGGATCGTGAAGGCCAA 893
||||||||||| ||||| ||||||||
Sbjct 1948 GGGATGCTTGGCATCGTCAAGGCCAA 1973
Score = 320 bits (173), Expect = 2e-86
Identities = 214/234 (91%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 21 ATGAGATCTCTTAAAAGTTTATTGGCTTTCTCATTTTTGTTCTTAACGGCTTCGTCGTTA 80
|||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
Sbjct 1 ATGAAATCTCTTAAAAGTATATTGGCTCTCTCATTTTTGTTCTTAACGGCTTCGTCATCA 60
Query 81 CTTGTCTCTTCTTATCGTTTAGAACCAACA-GATTTCGTTGAAGATGTAGAAAAAACACT 139
||| |||||||||| ||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 61 TTTGGCTCTTCTTATGGTTTAGAACCA-CATGATTTCGTTGAAGATGTAGTAAAAACACT 119
Query 140 GGTGGTTGATCATGATGGTACAGCTAATTTCAAAACCATCCAAAAAGCCATCAACTCCAT 199
|||||||| |||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct 120 GGTGGTTGGTCATGATGGTGCAACTGATTTCAAAACCATCCAAAAAGCCATCGACTCCAT 179
Query 200 TCCCTCTGGTAACAATGATTGGATTAAAATAATTCTTAATCCTGGAATCTACCA 253
||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 180 TCCCTCTGGTAACAACCATTGGATTAAAATAATTATTAGTCCTGGAATCTACCA 233
Score = 305 bits (165), Expect = 5e-82
Identities = 186/196 (95%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 897 aaaaaaaa-CAGGGATCATTTTACATATGCGGAGATAAACTGCATAGGGGAAGGAGCGAA 955
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2066 AAAAAAAATCAGGGATCATTTTACATTTGCGGAGATAAACTGCAAAGGGGAAGGAGCGAA 2125
Query 956 TAAGAGCGGAAGAGTTCGATGGGAGAAGAATCTTACTGCTGAAGATGTTAAATCTCTTAT 1015
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2126 TAAGAGAGGAAGAGTTCGATGGGAGAAGAATCTTAGTGCTGAAGATGTTAAATCTCTGAC 2185
Query 1016 TGAACCCAAAACTTTCATTAATGGAGATGGTTGGATGGCTACTCTTCCTTCTTCTCTCGT 1075
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2186 TGAACCCAAAACTTTCCTTAATGGAGATGGTTGGATGGGTACTCTTCCTTCTTCTCTCGT 2245
Query 1076 CTCTTTATATTTACCA 1091
|||||||||||| |||
Sbjct 2246 CTCTTTATATTTGCCA 2261
Score = 215 bits (116), Expect = 8e-55
Identities = 144/158 (91%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 254 CGAAAAGATAGTGATTCCGATGGAAAAGCAAAAGATAATAATGCAAGGAAATGACGCATC 313
|||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 646 CGAAAAGATAGTGATTCCGAGGGAGAAGCAAAAGATAATAATGCAAGGAAGCGACGCATC 705
Query 314 AAAAGTGATAATTCAATACAATGATGCAGGACTATCTAATTCGAGTGGTCCTTTCACACT 373
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 706 AAAAGTGATAATTCAATACAATGATGCAGGACTATCTGCTTCGAGTGGTCCTTTAAGAGT 765
Query 374 AAACGCCGAGTACTTCGTAGCTATCAACATTACATTCA 411
| ||||||| ||||| || |||||||||||||| ||||
Sbjct 766 AGACGCCGAATACTTTGTCGCTATCAACATTACTTTCA 803
> AT1G56480.1 | Symbols: | pseudogene, pectinesterase, blastp
match of 65% identity and 9.5e-47 P-value to GP|14495216|dbj|BAB60935.1||AP003578
putative pectin methylesterase {Oryza
sativa (japonica cultivar-group)} | chr1:21150293-21152844 REVERSE
LENGTH=2552
Length=2552
Score = 274 bits (148), Expect = 1e-72
Identities = 196/219 (89%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 413 GAATACTTATAACAA-GAGGACACCAATAATACTATATGAAG-ATATAAAGGTAGCCCCA 470
|||||| || |||| || ||||||| | |||| ||| ||| | ||||||||||| |||
Sbjct 1326 GAATACGAAT-ACAAGGATGACACCAGTTATACCGTATAAAGCA-ATAAAGGTAGCTCCA 1383
Query 471 TCAGTTATACTAACGGCGGACAAGGCATGGTTCTATAGCTGCAGGTTCATCAGTGTCCAA 530
|||||||||||| | ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1384 TCAGTTATACTAGCTGCGGACAAGGCGTGGTTCTATGGCTGCAGCTTCATCAGTGTCCAA 1443
Query 531 GACACAGTCGCTGATTTACTTGGCCGCCACTACTTCCAAAATTGTTACATCGAAGGAGCA 590
|||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||
Sbjct 1444 GACACAGTCGCTGATTTACTCGGCCGCCACTACTTCCAAAATTGTAACATTGTAGGAGCC 1503
Query 591 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 629
|||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATCGATTTCATATGGGGAGGAGGCCAATCTATATACCAA 1542
Score = 255 bits (138), Expect = 5e-67
Identities = 174/192 (91%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 899 aaaaaaCAGGGATCATTTTACATATGCGGAGATAAACTGCATAGGGGAAGGAGCGAATAA 958
||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2176 AAAAATCAGGGATAAATTTACATATGCGGAGATAAACTGCACAGGGGAAGGAGCGAGTAA 2235
Query 959 GAGCGGAAGAGTTCGATGGGAGAAGAATCTTACTGCTGAAGATGTTAAATCTCTTATTGA 1018
|| ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 2236 GAAAGGAAGAGTTGGATGGGAGAAGAATCTTTCTGCTAAAGATGTTGAATCTCTTATAGA 2295
Query 1019 ACCCAAAACTTTCATTAATGGAGATGGTTGGATGGCTACTCTTCCTTCTTCTCTCGTCTC 1078
||| |||| ||||||| ||| |||||||||||| || |||||||||||||||||||||||
Sbjct 2296 ACCAAAAAATTTCATTGATGAAGATGGTTGGATAGCCACTCTTCCTTCTTCTCTCGTCTC 2355
Query 1079 TTTATATTTACC 1090
||||||||||||
Sbjct 2356 TTTATATTTACC 2367
Score = 231 bits (125), Expect = 8e-60
Identities = 208/247 (84%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 639 ATACACGTTAAAAG-AGTGGCAACAAAGGGAATGCTGAAGAGAGAACAAATGTTAGCAGG 697
||| ||||| |||| |||| || ||||| | ||| |||||| || | |||||||| |||
Sbjct 1821 ATAAACGTT-AAAGCAGTGACATCAAAGCGCATGATGAAGAAAGGAGGAATGTTAGAAGG 1879
Query 698 ATAT-ATAACCGCGCAAGGGAGGGAAAGCGAAGAAGACACAAGCGGATTTGTGTTCAATA 756
| | |||||||| ||||||||||||||||| ||||||| ||| |||||||||||||| |
Sbjct 1880 GT-TCATAACCGCACAAGGGAGGGAAAGCGAGGAAGACAAAAGTGGATTTGTGTTCAA-A 1937
Query 757 -ATTGCGTGATTAAAGGAAG-TGGTAAGGCATTA-TTGGGAAGAGCTTACCGAGACTACT 813
|||| |||||| |||| || |||||||||| || || ||||||||||||||| ||||||
Sbjct 1938 CATTGTGTGATTCAAGG-AGATGGTAAGGCA-TATTTAGGAAGAGCTTACCGAAACTACT 1995
Query 814 CTAGAGTTGTCTTCTATGAAACTAGCATGTCCAATATTATTGAAAGTCGAGGATGGGATG 873
|||||||||||||||||||||| | |||||||||| || | | | || |||||||||||
Sbjct 1996 CTAGAGTTGTCTTCTATGAAACCACCATGTCCAATGTTGTCGTACGTAAAGGATGGGATG 2055
Query 874 CTTGGGA 880
|||||||
Sbjct 2056 CTTGGGA 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5