BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924343

Length=1178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59690.1 | Symbols:  | F-box associated ubiquitination effec...   337    2e-91
  AT1G59675.1 | Symbols:  | F-box family protein | chr1:21931833-...   211    1e-53
  AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein ...  99.0    9e-20


> AT1G59690.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr1:21935310-21935820 REVERSE LENGTH=432
Length=432

 Score =  337 bits (182),  Expect = 2e-91
 Identities = 262/301 (87%), Gaps = 4/301 (1%)
 Strand=Plus/Plus

Query  859   GATAGACACGAATGGACGCATAAACACTTTGTTTTGCCTCTTGCTGAAATGGAGCC-AAT  917
             ||||||||||||||||||||||| | |  | ||||| ||||| |||||||||| || |||
Sbjct  135   GATAGACACGAATGGACGCATAATCGC-GT-TTTTGACTCTTTCTGAAATGGA-CCTAAT  191

Query  918   GCGGAGCGAAAAGCTATGCTTCTATGGTGTTAGTTATGTTGGTGAGCTTATTTTTACACA  977
              ||||  ||||||| | |||| |||||||||||| ||| ||||||| || ||||| ||| 
Sbjct  192   ACGGAAAGAAAAGCCAAGCTTTTATGGTGTTAGTGATGCTGGTGAGATTGTTTTTGCACC  251

Query  978   AAGGAGGTTGTTTGGATCGTTTTATATTCTATATTTCGATCCGAGGAGAAACAGTATTAG  1037
             |  ||  ||||||| |||||||||| | |||||||| |||||||||||||||||||||||
Sbjct  252   ATCGATATTGTTTGAATCGTTTTATCTACTATATTTTGATCCGAGGAGAAACAGTATTAG  311

Query  1038  AGATGTCTTGTTTGAAGGAATTGTGGGTGATGAATTTAGAAGCCGCTATGGATTTGGTAA  1097
             ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  312   AGAAGTCTCGGTTGAAGGAATTGTGGGTGATGAATTTAGAAGCCGCTATGGATTTGTTAA  371

Query  1098  AGACTTTATGTACACCATGAATGTTTACCCAAATCACATCCAGAGTCTTGTGTCTTTGTG  1157
             ||||| |||||||| |||||| |||||||||||||||||| ||||||| |||| ||||||
Sbjct  372   AGACTATATGTACAACATGAAGGTTTACCCAAATCACATCAAGAGTCTCGTGTTTTTGTG  431

Query  1158  A  1158
             |
Sbjct  432   A  432


> AT1G59675.1 | Symbols:  | F-box family protein | chr1:21931833-21932403 
REVERSE LENGTH=495
Length=495

 Score =  211 bits (114),  Expect = 1e-53
 Identities = 177/207 (86%), Gaps = 6/207 (3%)
 Strand=Plus/Plus

Query  67   ATACTCTCAAGACTTCCTGCAAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTTTGG  126
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  64   ATACTCTCAAGACTTCCTGCGAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTCTGG  123

Query  127  TCGACCATTACCACAAGT-AAAGATTTCATCACCTCGTTCGCAACTCGGTCCTTAGCATC  185
            ||| |||  ||||| ||| ||| ||||||||| ||| || || ||| ||||||| |||||
Sbjct  124  TCGGCCAACACCACCAGTCAAA-ATTTCATCAACTCCTTTGCGACTGGGTCCTTGGCATC  182

Query  186  GCAGCCATCGGTACTGGTAACCGTCT-ATAAAGGCGAAATTTTGTTCGTTTTCTCGTCTC  244
            || ||| || |||||| ||||||||  | ||||| || ||| ||||||||||||||| ||
Sbjct  183  GCGGCCTTCTGTACTGCTAACCGTCCGA-AAAGGTGACATTCTGTTCGTTTTCTCGTATC  241

Query  245  CCCTAAACAA-AAGTAGTTCTGATGGT  270
            || || |||| || |||||| ||||||
Sbjct  242  CCGTAGACAAGAA-TAGTTCCGATGGT  267


 Score = 91.6 bits (49),  Expect = 2e-17
 Identities = 53/55 (96%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  1104  TATGTACACCATGAATGTTTACCCAAATCACATCCAGAGTCTTGTGTCTTTGTGA  1158
             |||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct  441   TATGTACACCATGAATGTTTACCCAAATCACATCGAAAGTCTTGTGTCTTTGTGA  495


> AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein 
(TIR-NBS-LRR class) | chr1:21167589-21173632 FORWARD LENGTH=3657
Length=3657

 Score = 99.0 bits (53),  Expect = 9e-20
 Identities = 82/95 (86%), Gaps = 6/95 (6%)
 Strand=Plus/Minus

Query  502   AAATACATAGTACTACGTAATCTTGGAGACTCCAAGATTTGCATTCTTACATTGGGCGCT  561
             ||||||||||||||||||  | |||||||||||||||||||||||||||||||||| | |
Sbjct  3653  AAATACATAGTACTACGTGCTATTGGAGACTCCAAGATTTGCATTCTTACATTGGGAGAT  3594

Query  562   CAAGGACAAG-GATTATGTAGAAAAATAATTACAT  595
              ||| ||||| | || |  |||||| |||||||||
Sbjct  3593  -AAGTACAAGCG-TT-T--AGAAAAGTAATTACAT  3564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57831027840


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5