BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924345

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50820.1 | Symbols:  | Aminotransferase-like, plant mobile d...   307    5e-83
  AT1G50750.1 | Symbols:  | Plant mobile domain protein family | ...   270    6e-72


> AT1G50820.1 | Symbols:  | Aminotransferase-like, plant mobile 
domain family protein | chr1:18833275-18834861 REVERSE LENGTH=1587
Length=1587

 Score =  307 bits (166),  Expect = 5e-83
 Identities = 291/352 (83%), Gaps = 6/352 (2%)
 Strand=Plus/Plus

Query  18    AACTCGAAAATGAACAGTTTTGAGTGGCGTCCCTACAC-AAGAACTGTGACAAACTGGAA  76
             ||||| |||||| | |||||||||||||| |||||||| || |||||||| ||||||| |
Sbjct  928   AACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAA-AACTGTGAAAAACTGGGA  986

Query  77    GTTTCCTAAG-TTTTACCCCGAGAAAGTGATGTGTGTTACTGTTTTTCCGAGTCTTGATG  135
              ||||||  | ||||| || |||| ||  ||| | ||  |||||  ||| |  |||||||
Sbjct  987   TTTTCCT-CGATTTTATCCTGAGAGAGCAATGCGGGTGCCTGTTGGTCCCAACCTTGATG  1045

Query  136   AAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTGGCATTAAGAAAG  195
             | ||||||||||||||||||||||||||||| || |||||||||||||| ||| | |  |
Sbjct  1046  ATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAGCTTGTTGGTATTGACAGTG  1105

Query  196   TGGAGCGTTACTT-CCCAAATAGAGTGGCTACACAGTTTGGAATGCTTCAGGATATTCCT  254
             |||||| |||||| ||||| | |||||||| |||||||||| |||| ||| ||| ||| |
Sbjct  1106  TGGAGCATTACTTTCCCAA-TCGAGTGGCTTCACAGTTTGGGATGCGTCAAGATGTTCAT  1164

Query  255   TCTTCTGTTGACAAGAACAACCTCTCACGGGAGGCAGCTTGGAATGATTACAATAAGCCT  314
             | | ||||| || |||| || |||||||| || |||||||||||||||||| | ||||||
Sbjct  1165  TGTCCTGTTAACCAGAAAAAACTCTCACGTGATGCAGCTTGGAATGATTACGACAAGCCT  1224

Query  315   ATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTACAATATCTCGTGTTA  366
             ||| ||| |||| || || ||||||||||||||||| |||||||| ||||||
Sbjct  1225  ATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCAATATCTTGTGTTA  1276


> AT1G50750.1 | Symbols:  | Plant mobile domain protein family 
| chr1:18809184-18812290 REVERSE LENGTH=2691
Length=2691

 Score =  270 bits (146),  Expect = 6e-72
 Identities = 209/240 (87%), Gaps = 2/240 (1%)
 Strand=Plus/Plus

Query  128   TCTTGATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTGGCAT  187
             ||||||||  |||||| ||||||||||||||||||| || || ||| |||||||||| ||
Sbjct  1068  TCTTGATGTTGAATTTGTCTCCTTTGCTCGATGCATTAAGGTGTCTCAGCTTGTTGGAAT  1127

Query  188   TAAGAAAGTGGAGCGTTAC-TTCCCAAATAGAGTGGCTACACAGTTTGGAATGCTTCAGG  246
             | | || ||||||| |||| ||||| ||| |||||||| |||||||||| |||||||| |
Sbjct  1128  TGACAATGTGGAGCATTACTTTCCC-AATCGAGTGGCTTCACAGTTTGGGATGCTTCAAG  1186

Query  247   ATATTCCTTCTTCTGTTGACAAGAACAACCTCTCACGGGAGGCAGCTTGGAATGATTACA  306
             || |||||| | ||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct  1187  ATGTTCCTTGTGCTGTTAACCAGAACAACCTCTCACAGGAGGCAGCTTGGAATGATTACA  1246

Query  307   ATAAGCCTATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTACAATATCTCGTGTTA  366
             ||||||||||||| ||||| ||||||  ||||||||| |||||| ||||| |||||||||
Sbjct  1247  ATAAGCCTATTAACGATTTAGCATTATTCATTCCTTCACGTTCTGCAATACCTCGTGTTA  1306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19403351114


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5