BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924347 Length=508 Score E Sequences producing significant alignments: (Bits) Value AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4... 484 3e-136 AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4... 377 4e-104 AT4G12210.1 | Symbols: | RING/U-box superfamily protein | chr4... 124 6e-28 AT4G12190.1 | Symbols: | RING/U-box superfamily protein | chr4... 121 8e-27 > AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4:7266546-7267154 REVERSE LENGTH=609 Length=609 Score = 484 bits (262), Expect = 3e-136 Identities = 400/465 (86%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 48 GATGAGATCCTTGTAAACCCTGCCACCGGCCACCGAACCGTAACGTCAATTCCGCTTTCC 107 |||||||||||| ||||||||| ||| ||||| ||| ||| |||||| | |||||||||| Sbjct 97 GATGAGATCCTTATAAACCCTGTCACTGGCCATCGAGCCGAAACGTCCACTCCGCTTTCC 156 Query 108 TATAAATCACTTCCCATCAATTCCAGTCTCCCTAGCTGTAGTCACCACCACATCCAATTG 167 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | Sbjct 157 TATAAATCACTTCCCATCAATTTCAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCG 216 Query 168 TTACTCCAGGATCGACTCAATAGCGATGACCACTGGTTGTGCGAAT-ACTTAGTCCCAAA 226 |||||||| |||| |||| ||||||| ||| | ||||||||||| | ||||||||||||| Sbjct 217 TTACTCCACGATCAACTCCATAGCGACGACAATTGGTTGTGCGA-TCACTTAGTCCCAAA 275 Query 227 GATCTCAACGGCGCCTGCAATCAACTCAGGTTTTGGGTACAATGGCGTTCATTTGACCGT 286 |||||||||||| |||||||||| |||||||| | |||| |||||| | |||||||| Sbjct 276 GATCTCAACGGC---TGCAATCAACGCAGGTTTTATGAACAACGGCGTTGAATTGACCGT 332 Query 287 -GAGTGTTATAGTTAGTTATCGGTACT-TCCATGTCGACGAGAGATCATTAAAG-ATATC 343 | | || | ||||| ||| | ||| | |||||||||| |||| ||||| |||| | ||| Sbjct 333 TG-GCGTCACAGTTACTTACCAGTA-TGTCCATGTCGAGGAGACATCATCAAAGGA-ATC 389 Query 344 AAGGATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAAC 403 |||||||||| || |||||||||||||||||| ||||||||||||| || |||||||| Sbjct 390 GAGGATGGTTCGACTAGGGAGCATGAAAGCAGAGGAATTGAAGAGTTTTAACATGGAAAC 449 Query 404 AGAGTCCTGTTCAAT-TCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGTACCCACTC 462 ||| || ||||| || | |||| |||||||||||||||||||||||||||| |||||||| Sbjct 450 AGATTCGTGTTCCATCT-GTCTACAGAGTCTAGTCTCCAGTTCGAAAACAGGACCCACTC 508 Query 463 GCATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTGAGT 505 ||||||||| | | ||||||||||||| | | |||||||| |||| Sbjct 509 GCATGAGTTGTTCCCATGTCTTCCATAGTAGCTGTCTCGTGGAGT 553 > AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4:7268837-7270267 REVERSE LENGTH=1074 Length=1074 Score = 377 bits (204), Expect = 4e-104 Identities = 383/464 (83%), Gaps = 34/464 (7%) Strand=Plus/Plus Query 48 GATGAGATCCTTGTAAACCCTGCCACCGGCCACCGAACCGTAACGTCAATTCCGCTTTCC 107 |||||||||||| ||||||||| ||| ||||| ||||||| |||||| | |||||||||| Sbjct 118 GATGAGATCCTTATAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCC 177 Query 108 TATAAATCACTTCCCATCAATTCCAGTCTCCCTAGCTGTAGTCACCACCACATCCAATTG 167 |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| | Sbjct 178 TATAAATCACTTCCCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCG 237 Query 168 TTACTCCAGGATCGACTCAATAGCGATGACCACTGGTTGTGCGAAT-ACTTAGTCCCAAA 226 |||||||| ||||||||| |||| || ||||| ||||||||||| | ||||||||||||| Sbjct 238 TTACTCCATGATCGACTCCATAGAGACGACCATTGGTTGTGCGA-TCACTTAGTCCCAAA 296 Query 227 GATCTCAACGGCGCCTGCAATCAACTCAGGTTTTGGGTACAATGGCGTTCATTTGACCGT 286 |||||||| | || | | ||| ||||||||||| | || | || |||||| Sbjct 297 GATCTCAA-GT-GC-T--A-TCAGCTCAGGTTTTG--T----TGAC-TT-----GACCGT 338 Query 287 GAGTGTTATAGTTAGTTATCG-GTACTTCCATGTCGACGAGAG-ATCATTAAAGATATCA 344 ||| || |||| ||| | |||| ||| |||||||||| | | ||||||||||||| Sbjct 339 GAGCGTCGCGGTTACTTA-CAAGTACGTCCGTGTCGACGAG-GCAGCATTAAAGATATCG 396 Query 345 AGGATGGTTCTACAAGGGAGCATGAAAGCAGAA-AAATTGAAGAGTTTGAAGATGGAAAC 403 |||||||||||||||||| ||||| | ||| ||| ||||||||||| | | Sbjct 397 AGGATGGTTCTACAAGGGTTCATGAGCGTAGAGGAAACA-AAGAGTTTGAAC--G----C 449 Query 404 AGAGTCCTGTTCAATTCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGTACCCACTCG 463 |||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 450 AGAGTCGTGTTCCATTTGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGCACCCACTCG 509 Query 464 CATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTGAGT 505 |||||||| | | ||||||||||| ||||| |||||||| |||| Sbjct 510 CATGAGTTGTTCCCATGTCTTCCACAATGGTTGTCTCGTGGAGT 553 > AT4G12210.1 | Symbols: | RING/U-box superfamily protein | chr4:7281308-7281919 REVERSE LENGTH=612 Length=612 Score = 124 bits (67), Expect = 6e-28 Identities = 137/169 (81%), Gaps = 11/169 (7%) Strand=Plus/Plus Query 345 AGGATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAACA 404 ||||| ||||||| ||| || || |||||||| |||||||||||||||||||||||||| Sbjct 391 AGGATAGTTCTACTAGGAAGGATAAAAGCAGAGGAATTGAAGAGTTTGAAGATGGAAACA 450 Query 405 GAGTCCTGTTCAAT-TCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAAC--AGT-ACC-CA 459 ||||| |||||||| | |||| ||| |||||||||| || | ||||| || ||| || Sbjct 451 GAGTCTTGTTCAATCT-GTCTTGAGAATCTAGTCTCCGGTCC-AAAACCTAGCGACCTCA 508 Query 460 CTCGCATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTG-AGT 505 | ||||||| || | | ||||||||||| ||| |||||| ||| ||| Sbjct 509 CACGCATGACTTGTTCTCATGTCTTCCACAATCCCTGTCTC-TTGGAGT 556 > AT4G12190.1 | Symbols: | RING/U-box superfamily protein | chr4:7278545-7278760 REVERSE LENGTH=216 Length=216 Score = 121 bits (65), Expect = 8e-27 Identities = 128/157 (82%), Gaps = 9/157 (6%) Strand=Plus/Plus Query 348 ATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAACAGAG 407 |||||||| | |||||| || ||| |||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGTTCTGCTAGGGAGAATAAAAACAGAGGAATTGAAGAGTTTGAAGATGGAAACAGAG 60 Query 408 TCC-TGTTCAAT-TCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAAC-AGT-ACC-CACTC 462 || ||||| || | ||||| |||||||||||||| || | ||| | || || ||| | Sbjct 61 -CCGTGTTCCATCT-GTCTCGAGAGTCTAGTCTCCGGTCCTAAACCTAGGGACATCACAC 118 Query 463 GCATGAGTT-T-CACATGTCTTCCATAATGGATGTCT 497 |||||| || | | ||||||||||| ||||| ||||| Sbjct 119 GCATGACTTGTTCTCATGTCTTCCACAATGGCTGTCT 155 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24263093001 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5