BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924347
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4... 484 3e-136
AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4... 377 4e-104
AT4G12210.1 | Symbols: | RING/U-box superfamily protein | chr4... 124 6e-28
AT4G12190.1 | Symbols: | RING/U-box superfamily protein | chr4... 121 8e-27
> AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4:7266546-7267154
REVERSE LENGTH=609
Length=609
Score = 484 bits (262), Expect = 3e-136
Identities = 400/465 (86%), Gaps = 15/465 (3%)
Strand=Plus/Plus
Query 48 GATGAGATCCTTGTAAACCCTGCCACCGGCCACCGAACCGTAACGTCAATTCCGCTTTCC 107
|||||||||||| ||||||||| ||| ||||| ||| ||| |||||| | ||||||||||
Sbjct 97 GATGAGATCCTTATAAACCCTGTCACTGGCCATCGAGCCGAAACGTCCACTCCGCTTTCC 156
Query 108 TATAAATCACTTCCCATCAATTCCAGTCTCCCTAGCTGTAGTCACCACCACATCCAATTG 167
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 157 TATAAATCACTTCCCATCAATTTCAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCG 216
Query 168 TTACTCCAGGATCGACTCAATAGCGATGACCACTGGTTGTGCGAAT-ACTTAGTCCCAAA 226
|||||||| |||| |||| ||||||| ||| | ||||||||||| | |||||||||||||
Sbjct 217 TTACTCCACGATCAACTCCATAGCGACGACAATTGGTTGTGCGA-TCACTTAGTCCCAAA 275
Query 227 GATCTCAACGGCGCCTGCAATCAACTCAGGTTTTGGGTACAATGGCGTTCATTTGACCGT 286
|||||||||||| |||||||||| |||||||| | |||| |||||| | ||||||||
Sbjct 276 GATCTCAACGGC---TGCAATCAACGCAGGTTTTATGAACAACGGCGTTGAATTGACCGT 332
Query 287 -GAGTGTTATAGTTAGTTATCGGTACT-TCCATGTCGACGAGAGATCATTAAAG-ATATC 343
| | || | ||||| ||| | ||| | |||||||||| |||| ||||| |||| | |||
Sbjct 333 TG-GCGTCACAGTTACTTACCAGTA-TGTCCATGTCGAGGAGACATCATCAAAGGA-ATC 389
Query 344 AAGGATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAAC 403
|||||||||| || |||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 390 GAGGATGGTTCGACTAGGGAGCATGAAAGCAGAGGAATTGAAGAGTTTTAACATGGAAAC 449
Query 404 AGAGTCCTGTTCAAT-TCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGTACCCACTC 462
||| || ||||| || | |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 450 AGATTCGTGTTCCATCT-GTCTACAGAGTCTAGTCTCCAGTTCGAAAACAGGACCCACTC 508
Query 463 GCATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTGAGT 505
||||||||| | | ||||||||||||| | | |||||||| ||||
Sbjct 509 GCATGAGTTGTTCCCATGTCTTCCATAGTAGCTGTCTCGTGGAGT 553
> AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4:7268837-7270267
REVERSE LENGTH=1074
Length=1074
Score = 377 bits (204), Expect = 4e-104
Identities = 383/464 (83%), Gaps = 34/464 (7%)
Strand=Plus/Plus
Query 48 GATGAGATCCTTGTAAACCCTGCCACCGGCCACCGAACCGTAACGTCAATTCCGCTTTCC 107
|||||||||||| ||||||||| ||| ||||| ||||||| |||||| | ||||||||||
Sbjct 118 GATGAGATCCTTATAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCC 177
Query 108 TATAAATCACTTCCCATCAATTCCAGTCTCCCTAGCTGTAGTCACCACCACATCCAATTG 167
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct 178 TATAAATCACTTCCCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCG 237
Query 168 TTACTCCAGGATCGACTCAATAGCGATGACCACTGGTTGTGCGAAT-ACTTAGTCCCAAA 226
|||||||| ||||||||| |||| || ||||| ||||||||||| | |||||||||||||
Sbjct 238 TTACTCCATGATCGACTCCATAGAGACGACCATTGGTTGTGCGA-TCACTTAGTCCCAAA 296
Query 227 GATCTCAACGGCGCCTGCAATCAACTCAGGTTTTGGGTACAATGGCGTTCATTTGACCGT 286
|||||||| | || | | ||| ||||||||||| | || | || ||||||
Sbjct 297 GATCTCAA-GT-GC-T--A-TCAGCTCAGGTTTTG--T----TGAC-TT-----GACCGT 338
Query 287 GAGTGTTATAGTTAGTTATCG-GTACTTCCATGTCGACGAGAG-ATCATTAAAGATATCA 344
||| || |||| ||| | |||| ||| |||||||||| | | |||||||||||||
Sbjct 339 GAGCGTCGCGGTTACTTA-CAAGTACGTCCGTGTCGACGAG-GCAGCATTAAAGATATCG 396
Query 345 AGGATGGTTCTACAAGGGAGCATGAAAGCAGAA-AAATTGAAGAGTTTGAAGATGGAAAC 403
|||||||||||||||||| ||||| | ||| ||| ||||||||||| | |
Sbjct 397 AGGATGGTTCTACAAGGGTTCATGAGCGTAGAGGAAACA-AAGAGTTTGAAC--G----C 449
Query 404 AGAGTCCTGTTCAATTCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGTACCCACTCG 463
|||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 450 AGAGTCGTGTTCCATTTGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGCACCCACTCG 509
Query 464 CATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTGAGT 505
|||||||| | | ||||||||||| ||||| |||||||| ||||
Sbjct 510 CATGAGTTGTTCCCATGTCTTCCACAATGGTTGTCTCGTGGAGT 553
> AT4G12210.1 | Symbols: | RING/U-box superfamily protein | chr4:7281308-7281919
REVERSE LENGTH=612
Length=612
Score = 124 bits (67), Expect = 6e-28
Identities = 137/169 (81%), Gaps = 11/169 (7%)
Strand=Plus/Plus
Query 345 AGGATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAACA 404
||||| ||||||| ||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 391 AGGATAGTTCTACTAGGAAGGATAAAAGCAGAGGAATTGAAGAGTTTGAAGATGGAAACA 450
Query 405 GAGTCCTGTTCAAT-TCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAAC--AGT-ACC-CA 459
||||| |||||||| | |||| ||| |||||||||| || | ||||| || ||| ||
Sbjct 451 GAGTCTTGTTCAATCT-GTCTTGAGAATCTAGTCTCCGGTCC-AAAACCTAGCGACCTCA 508
Query 460 CTCGCATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTG-AGT 505
| ||||||| || | | ||||||||||| ||| |||||| ||| |||
Sbjct 509 CACGCATGACTTGTTCTCATGTCTTCCACAATCCCTGTCTC-TTGGAGT 556
> AT4G12190.1 | Symbols: | RING/U-box superfamily protein | chr4:7278545-7278760
REVERSE LENGTH=216
Length=216
Score = 121 bits (65), Expect = 8e-27
Identities = 128/157 (82%), Gaps = 9/157 (6%)
Strand=Plus/Plus
Query 348 ATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAACAGAG 407
|||||||| | |||||| || ||| |||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCTGCTAGGGAGAATAAAAACAGAGGAATTGAAGAGTTTGAAGATGGAAACAGAG 60
Query 408 TCC-TGTTCAAT-TCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAAC-AGT-ACC-CACTC 462
|| ||||| || | ||||| |||||||||||||| || | ||| | || || ||| |
Sbjct 61 -CCGTGTTCCATCT-GTCTCGAGAGTCTAGTCTCCGGTCCTAAACCTAGGGACATCACAC 118
Query 463 GCATGAGTT-T-CACATGTCTTCCATAATGGATGTCT 497
|||||| || | | ||||||||||| ||||| |||||
Sbjct 119 GCATGACTTGTTCTCATGTCTTCCACAATGGCTGTCT 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5