BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924350
Length=338
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4... 291 4e-78
AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4... 248 2e-65
> AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4:7268837-7270267
REVERSE LENGTH=1074
Length=1074
Score = 291 bits (157), Expect = 4e-78
Identities = 232/267 (87%), Gaps = 10/267 (4%)
Strand=Plus/Plus
Query 21 ATGAATGATCCCATTCCCAAA-CTCGCAGTGGA-AGTTCAGGTCCAAG-AGAGA-AG--T 74
||||||||||||||||||||| | || ||| || ||||||||||||| |||| || |
Sbjct 1 ATGAATGATCCCATTCCCAAAGC-CGTAGT-GAGCGTTCAGGTCCAAGCTGAGAGAGTCT 58
Query 75 CT--CTCTCCATCAGAAAGATATACAAACTCAATCCTCCTCATCATCAATACCATAAAGG 132
|| |||||||||| || || |||||||||| ||| |||||||| |||||||||| ||||
Sbjct 59 CTCGCTCTCCATCACAAGGAAATACAAACTCGATCTTCCTCATCGTCAATACCATTAAGG 118
Query 133 ATGAGATCCTTGTAAATCCTGCCACAGGCCATCAAACCGTAACGTCAATTCCGCTTTCCT 192
||||||||||| |||| |||| ||| ||||||| ||||| |||||| | |||||||||||
Sbjct 119 ATGAGATCCTTATAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCCT 178
Query 193 ATAAATCACTTCCCATCAATTTTAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGT 252
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 179 ATAAATCACTTCCCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCGT 238
Query 253 TACTCCACGATTGACTCTATAGCGACG 279
||||||| ||| ||||| |||| ||||
Sbjct 239 TACTCCATGATCGACTCCATAGAGACG 265
> AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4:7266546-7267154
REVERSE LENGTH=609
Length=609
Score = 248 bits (134), Expect = 2e-65
Identities = 168/185 (91%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 95 TACAAACTCAATCCTCCTCATCATCAATACCATAAAGGATGAGATCCTTGTAAATCCTGC 154
||||||||| ||| |||||||| |||||||||| ||||||||||||||| |||| ||||
Sbjct 60 TACAAACTCGATCTTCCTCATCGTCAATACCATTAAGGATGAGATCCTTATAAACCCTGT 119
Query 155 CACAGGCCATCAAACCGTAACGTCAATTCCGCTTTCCTATAAATCACTTCCCATCAATTT 214
||| ||||||| | ||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 120 CACTGGCCATCGAGCCGAAACGTCCACTCCGCTTTCCTATAAATCACTTCCCATCAATTT 179
Query 215 TAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCACGATTGACTCTATAG 274
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 180 CAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCACGATCAACTCCATAG 239
Query 275 CGACG 279
|||||
Sbjct 240 CGACG 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15784073186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5