BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924351 Length=610 Score E Sequences producing significant alignments: (Bits) Value AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specifi... 473 7e-133 AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransf... 248 4e-65 AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransf... 243 2e-63 > AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specific Xylosyltransferase 1 | chr1:21185662-21188369 REVERSE LENGTH=1625 Length=1625 Score = 473 bits (256), Expect = 7e-133 Identities = 385/442 (87%), Gaps = 30/442 (7%) Strand=Plus/Plus Query 32 CTGGTTGATTAGCATTTCTAGACAGAACCATGAAGAAAAAGTTCTTGTGATCGCTGAAGA 91 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 599 CTGGTTGATTAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGA 658 Query 92 TTACGCTACTTTGTACAAAGTCAACGAAAGGTGGCCTGGTCATGCCGTCCTCATTCCTTC 151 || ||||||||||||||||||||||||| ||||||||||||||| || ||||||||| | Sbjct 659 CTATGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCC 718 Query 152 AGCGTTGGATCCTCAAGCCGCACACAAATTTGGTTCCCAGG----C--CA--CA-ACATC 202 ||||||||||||||| |||||||||||||||||||||||| | || | ||||| Sbjct 719 GGCGTTGGATCCTCAATCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATC 778 Query 203 TC-------------T-TG--AA-CATTT-GGAGCTAGGTTACAATGTTATGTACAATGA 244 || | | || ||||| |||||||||||||||||||||||||||||| Sbjct 779 TCGGAGGCCACAACATCTCTTAAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGA 838 Query 245 TGTTGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATA 304 ||||||||||||||||||||||||||| ||| | |||||||| |||||| |||| ||||| Sbjct 839 TGTTGATATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATA 898 Query 305 CTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGGTCTACCACCACG 364 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct 899 CTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGATTTACCACCTCT 958 Query 365 GAGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC---CCACGGATGG 421 |||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||| Sbjct 959 AAGTCGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGG 1018 Query 422 CGCAAAGCTTCTAATGAAGACA 443 || ||||||||||||||||||| Sbjct 1019 CGGAAAGCTTCTAATGAAGACA 1040 Score = 111 bits (60), Expect = 6e-24 Identities = 70/74 (95%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 441 ACACCCAAGCAAAGAAACCACATGATCATCAGCCTGCTTTTAATCGGGCACTTCACAAAA 500 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1075 ACACTCAAGCAAAGAAACCACATG---ATCAGCCTGCTTTTAATCGGGCACTTCACAAAA 1131 Query 501 CAGCTAATCAAGTA 514 |||||||||||||| Sbjct 1132 CAGCTAATCAAGTA 1145 > AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransferase 2 | chr4:756363-758590 FORWARD LENGTH=1501 Length=1501 Score = 248 bits (134), Expect = 4e-65 Identities = 219/259 (85%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 190 AGGCCACAACATCTCTTG-AACA-TTTGGAGCTAGGTTACAATGTTATGTACAATGATGT 247 |||||||||||||||||| || | |||||||||||||||||||||||||||||| ||||| Sbjct 703 AGGCCACAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGT 761 Query 248 TGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTT 307 ||||||||| ||| | |||||||| ||||| ||||| |||||||||| ||||| ||||| Sbjct 762 TGATATGGTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTT 821 Query 308 CATGGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCAC-GG 365 | |||||| ||| | | | ||| ||||||||||||||| |||| | ||||| | | || Sbjct 822 TACGGATGATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGG 880 Query 366 AGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC--CC-ACGGATGGC 422 | || | ||||| ||||||| |||||||||||||||||| ||||| || ||| |||| Sbjct 881 A-TCAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGT 939 Query 423 GCAAAGCTTCTAATGAAGA 441 ||||||||||||||||||| Sbjct 940 GCAAAGCTTCTAATGAAGA 958 > AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransferase 1 | chr4:764514-766865 FORWARD LENGTH=1405 Length=1405 Score = 243 bits (131), Expect = 2e-63 Identities = 219/260 (84%), Gaps = 12/260 (5%) Strand=Plus/Plus Query 190 AGGCCACAACATCTCTTG-AACA-TTTGGAGCTAGGTTACAATGTTATGTACAATGATGT 247 ||||| |||||||||||| || | |||||||||||||||||||||||||||||| ||||| Sbjct 564 AGGCCGCAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGT 622 Query 248 TGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTT 307 ||||||||| ||| | |||||||| |||| ||||| |||||||||| ||||| || || Sbjct 623 TGATATGGTTTGGTTGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTT 682 Query 308 CATGGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCA-C-G 364 || ||||||||| | | | ||| ||||||||||||||| |||| | |||||| | | | Sbjct 683 CACCGATGACATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAC-ATCCG 740 Query 365 GAGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC--CC-ACGGATGG 421 || |||| ||||| ||||||| |||||||||||||||||| ||||| || ||| |||| Sbjct 741 GA-TCGAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGG 799 Query 422 CGCAAAGCTTCTAATGAAGA 441 ||||||||||||||||||| Sbjct 800 TGCAAAGCTTCTAATGAAGA 819 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29386975995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5