BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924351
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specifi... 473 7e-133
AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransf... 248 4e-65
AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransf... 243 2e-63
> AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specific
Xylosyltransferase 1 | chr1:21185662-21188369 REVERSE
LENGTH=1625
Length=1625
Score = 473 bits (256), Expect = 7e-133
Identities = 385/442 (87%), Gaps = 30/442 (7%)
Strand=Plus/Plus
Query 32 CTGGTTGATTAGCATTTCTAGACAGAACCATGAAGAAAAAGTTCTTGTGATCGCTGAAGA 91
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 599 CTGGTTGATTAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGA 658
Query 92 TTACGCTACTTTGTACAAAGTCAACGAAAGGTGGCCTGGTCATGCCGTCCTCATTCCTTC 151
|| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |
Sbjct 659 CTATGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCC 718
Query 152 AGCGTTGGATCCTCAAGCCGCACACAAATTTGGTTCCCAGG----C--CA--CA-ACATC 202
||||||||||||||| |||||||||||||||||||||||| | || | |||||
Sbjct 719 GGCGTTGGATCCTCAATCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATC 778
Query 203 TC-------------T-TG--AA-CATTT-GGAGCTAGGTTACAATGTTATGTACAATGA 244
|| | | || ||||| ||||||||||||||||||||||||||||||
Sbjct 779 TCGGAGGCCACAACATCTCTTAAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGA 838
Query 245 TGTTGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATA 304
||||||||||||||||||||||||||| ||| | |||||||| |||||| |||| |||||
Sbjct 839 TGTTGATATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATA 898
Query 305 CTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGGTCTACCACCACG 364
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 899 CTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGATTTACCACCTCT 958
Query 365 GAGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC---CCACGGATGG 421
|||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||
Sbjct 959 AAGTCGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGG 1018
Query 422 CGCAAAGCTTCTAATGAAGACA 443
|| |||||||||||||||||||
Sbjct 1019 CGGAAAGCTTCTAATGAAGACA 1040
Score = 111 bits (60), Expect = 6e-24
Identities = 70/74 (95%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 441 ACACCCAAGCAAAGAAACCACATGATCATCAGCCTGCTTTTAATCGGGCACTTCACAAAA 500
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 ACACTCAAGCAAAGAAACCACATG---ATCAGCCTGCTTTTAATCGGGCACTTCACAAAA 1131
Query 501 CAGCTAATCAAGTA 514
||||||||||||||
Sbjct 1132 CAGCTAATCAAGTA 1145
> AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransferase
2 | chr4:756363-758590 FORWARD LENGTH=1501
Length=1501
Score = 248 bits (134), Expect = 4e-65
Identities = 219/259 (85%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 190 AGGCCACAACATCTCTTG-AACA-TTTGGAGCTAGGTTACAATGTTATGTACAATGATGT 247
|||||||||||||||||| || | |||||||||||||||||||||||||||||| |||||
Sbjct 703 AGGCCACAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGT 761
Query 248 TGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTT 307
||||||||| ||| | |||||||| ||||| ||||| |||||||||| ||||| |||||
Sbjct 762 TGATATGGTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTT 821
Query 308 CATGGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCAC-GG 365
| |||||| ||| | | | ||| ||||||||||||||| |||| | ||||| | | ||
Sbjct 822 TACGGATGATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGG 880
Query 366 AGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC--CC-ACGGATGGC 422
| || | ||||| ||||||| |||||||||||||||||| ||||| || ||| ||||
Sbjct 881 A-TCAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGT 939
Query 423 GCAAAGCTTCTAATGAAGA 441
|||||||||||||||||||
Sbjct 940 GCAAAGCTTCTAATGAAGA 958
> AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransferase
1 | chr4:764514-766865 FORWARD LENGTH=1405
Length=1405
Score = 243 bits (131), Expect = 2e-63
Identities = 219/260 (84%), Gaps = 12/260 (5%)
Strand=Plus/Plus
Query 190 AGGCCACAACATCTCTTG-AACA-TTTGGAGCTAGGTTACAATGTTATGTACAATGATGT 247
||||| |||||||||||| || | |||||||||||||||||||||||||||||| |||||
Sbjct 564 AGGCCGCAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGT 622
Query 248 TGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTT 307
||||||||| ||| | |||||||| |||| ||||| |||||||||| ||||| || ||
Sbjct 623 TGATATGGTTTGGTTGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTT 682
Query 308 CATGGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCA-C-G 364
|| ||||||||| | | | ||| ||||||||||||||| |||| | |||||| | | |
Sbjct 683 CACCGATGACATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAC-ATCCG 740
Query 365 GAGTCGAGGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGC--CC-ACGGATGG 421
|| |||| ||||| ||||||| |||||||||||||||||| ||||| || ||| ||||
Sbjct 741 GA-TCGAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGG 799
Query 422 CGCAAAGCTTCTAATGAAGA 441
|||||||||||||||||||
Sbjct 800 TGCAAAGCTTCTAATGAAGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5