BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924360
Length=343
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26860.2 | Symbols: | Plant self-incompatibility protein S1... 272 1e-72
> AT3G26860.2 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:9901516-9901884 REVERSE LENGTH=369
Length=369
Score = 272 bits (147), Expect = 1e-72
Identities = 228/265 (86%), Gaps = 13/265 (5%)
Strand=Plus/Plus
Query 1 AAAACAAAAAACTCTTGTGGATGAGGTGTTATTCCAAAAATGACGTTATAGGTCCAAAAA 60
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 89 AAAACAAAAAACTCTTATGGATGAGATGTTATTCCAAAGATGACGTTATAGGTCCATTAA 148
Query 61 TAATACCAATCGGAGGGCAT--TTTATAGATAATTTTCGTACTAACAT-TTGGAGTACGA 117
||||||| |||||||||||| || | || ||||| |||| ||||| || | |||||
Sbjct 149 TAATACCGATCGGAGGGCATAGGTT-CA-ATTATTTTGGTACCAACATATTTG-CTACGA 205
Query 118 CTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACTATCAAAACTTTACAG 177
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 206 CTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACCATCAAAACTTTACAG 265
Query 178 CATTTAAACAATTTA--GTTATA-AGGATTATGGAGGCTTATGGGATTGGATAGCAAGAG 234
||||||||| |||| || | || || |||||||| |||||||||||| ||||||||
Sbjct 266 CATTTAAAC--TTTACAGTGCTTCAG-ATGATGGAGGCGTATGGGATTGGAGAGCAAGAG 322
Query 235 AAGATAAAATCTATTTAAAGA-AAA 258
||||| |||||| |||||| |||
Sbjct 323 AAGATGGGATCTATCTAAAGATAAA 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16035411931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5