BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924361
Length=485
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56555.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 490 5e-138
> AT1G56555.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:21191121-21192217 REVERSE LENGTH=534
Length=534
Score = 490 bits (265), Expect = 5e-138
Identities = 320/347 (92%), Gaps = 2/347 (1%)
Strand=Plus/Plus
Query 114 TTGAAGAAAGTAACACTTGGCCAACCACAGACACTTGGTATTGTTGTATCAAACGAAGAA 173
||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 184 TTGAAGAAAGTAACACTTGGCCAACCACAGAAACTTGGTAAAGTTGTATCAAAGGAAGAA 243
Query 174 AATTCTGATATTGGCTCTAATATCATAAGCAATGTTGTAGAAAACATGG-AGAAAAATGA 232
|||||||||||||||||||||| || | | ||||||| ||||||||||| || |||| ||
Sbjct 244 AATTCTGATATTGGCTCTAATAACACATGTAATGTTGGAGAAAACATGGAAG-AAAAGGA 302
Query 233 GAGATTATCGGTTGATGGAGAACAAGTAGAGTTACGTGTACCAAAAGAAAAGGCTCCAAG 292
| |||||| || ||| |||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 303 AACATTATCAGTCGATCGAGAACTAGTAGAGTTAAGTGTACAAAAAGAAAAGGCTCCAAG 362
Query 293 AAAAATTGTTAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA 352
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AAAAATTGTGAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA 422
Query 353 GAGGAGGACATCGAAAGGAAGTTTTAGTTCTTTCGATGAGCATGATGTTATGTCTTTGAA 412
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 423 GAGGAGGACATCGAAAGGAAGTTTTAGTTCCTTCGATGAGCATGAGGTTATGTCTTTGAA 482
Query 413 ACCATTGAAATCGATTCTGAGAAAGGATTCAGAAGTAAGCAAATATC 459
||||||||| |||||||| ||||||||||||| |||||||||| |||
Sbjct 483 ACCATTGAAGTCGATTCTAAGAAAGGATTCAGGAGTAAGCAAAGATC 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23107707620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5