BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924361 Length=485 Score E Sequences producing significant alignments: (Bits) Value AT1G56555.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 490 5e-138 > AT1G56555.1 | Symbols: | unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21191121-21192217 REVERSE LENGTH=534 Length=534 Score = 490 bits (265), Expect = 5e-138 Identities = 320/347 (92%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 114 TTGAAGAAAGTAACACTTGGCCAACCACAGACACTTGGTATTGTTGTATCAAACGAAGAA 173 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 184 TTGAAGAAAGTAACACTTGGCCAACCACAGAAACTTGGTAAAGTTGTATCAAAGGAAGAA 243 Query 174 AATTCTGATATTGGCTCTAATATCATAAGCAATGTTGTAGAAAACATGG-AGAAAAATGA 232 |||||||||||||||||||||| || | | ||||||| ||||||||||| || |||| || Sbjct 244 AATTCTGATATTGGCTCTAATAACACATGTAATGTTGGAGAAAACATGGAAG-AAAAGGA 302 Query 233 GAGATTATCGGTTGATGGAGAACAAGTAGAGTTACGTGTACCAAAAGAAAAGGCTCCAAG 292 | |||||| || ||| |||||| |||||||||| |||||| |||||||||||||||||| Sbjct 303 AACATTATCAGTCGATCGAGAACTAGTAGAGTTAAGTGTACAAAAAGAAAAGGCTCCAAG 362 Query 293 AAAAATTGTTAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA 352 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AAAAATTGTGAGCATAAAGGATGAAGTTGATGAGATACGAATAAGTTCAAGGAGAATCAA 422 Query 353 GAGGAGGACATCGAAAGGAAGTTTTAGTTCTTTCGATGAGCATGATGTTATGTCTTTGAA 412 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 423 GAGGAGGACATCGAAAGGAAGTTTTAGTTCCTTCGATGAGCATGAGGTTATGTCTTTGAA 482 Query 413 ACCATTGAAATCGATTCTGAGAAAGGATTCAGAAGTAAGCAAATATC 459 ||||||||| |||||||| ||||||||||||| |||||||||| ||| Sbjct 483 ACCATTGAAGTCGATTCTAAGAAAGGATTCAGGAGTAAGCAAAGATC 529 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23107707620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5