BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924364
Length=542
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56580.1 | Symbols: SVB | Protein of unknown function, DUF53... 839 0.0
> AT1G56580.1 | Symbols: SVB | Protein of unknown function, DUF538
| chr1:21198259-21198956 REVERSE LENGTH=698
Length=698
Score = 839 bits (454), Expect = 0.0
Identities = 503/527 (95%), Gaps = 1/527 (0%)
Strand=Plus/Plus
Query 7 aaaaaaaCACAGAGATGGGTTTGGTTACAGATGAAGTGAGGGCTAGGGCAGAGAAATACA 66
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 42 AAAAAAA-ACAGAGATGGGTTTGGTTACAGATGAAGTGAGAGCTAGGGCAGAGAAATACA 100
Query 67 CAGGAGATGAGATATGCCGTGAGAAGACAAAGGAGTTTCTCAAGGAAGTTTCTATGCCTA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 CAGGAGATGAGATATGCCGTGAGAAGACAAAGGAGTTTCTCAAGGAAGTTTCTATGCCTA 160
Query 127 ATGGTTTATTGCCATTGAAGGACATTGAAGAGGTTGGTTACGACAGAGAGACAGGTATTG 186
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 161 ATGGTTTATTGCCATTGAAGGACATTGAAGAAGTTGGTTACGACAGAGAGACAGGTATTG 220
Query 187 TCTGGCTGAAGCAGAAGAAGAGCATCACCCACAAGTTTCTAGAAATTGGGAAACTTGTCT 246
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 221 TCTGGCTGAAGCAGAAGAAGAGCATCACCCACAAGTTTGAAGCCATTGGTAAACTTGTCT 280
Query 247 CTTACGCCACCGAGGTCACTGCCCAGGTGGAGGTCGGAAAGATCAAGAAGCTCACCGGTG 306
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 281 CTTACGCCACCGAGGTCATTGCACAGGTGGAGGTCGGAAAGATCAAGAAGCTTACCGGTG 340
Query 307 TTAAGGCTAAGGAGCTTCTTATTTGGGTCACTCTCAATGAGCTTACCTTGGAGCAGCCAA 366
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 341 TTAAGGCCAAGGAGCTTCTTATTTGGGTCACTCTCAATGAGCTTGTCTTGGAGCAGCCGA 400
Query 367 TAAGTTCAGGGAAGATCAATTTCAGGACACCAACAGGTTTGTCCAGGACTTTCCCAGTGT 426
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 401 CAAGTTCAGGGAAGATCAATTTCAGGACACCAACTGGTCTGTCCAGGACTTTCCCAGTGT 460
Query 427 CGGCTTTTGTTGTTCCTGAGGTTGAGAAGCCTGCAATGGAGAAGAACAATGGAACCACTG 486
| ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 461 CTGCTTTCGTTGTTCCTGAAGTTGAGAAGCCTGCAACGGAGAAGAACAATGGAACCACTG 520
Query 487 AGGTCAAAGAAGCTGTTGCAGTTACAGATGCTTAGTCTCTTTAATCT 533
|||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 521 AGGTCAAAGAAGCTGTTGCAGTCACAGATGCTTAGTCTCTCTAATCT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25971053999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5