BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924373
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 272 4e-72
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 244 9e-64
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 239 4e-62
AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604... 189 4e-47
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 185 6e-46
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 113 3e-24
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 100 2e-20
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 91.6 1e-17
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 86.1 6e-16
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 82.4 8e-15
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 75.0 1e-12
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 272 bits (147), Expect = 4e-72
Identities = 304/377 (81%), Gaps = 21/377 (6%)
Strand=Plus/Plus
Query 551 AGTAAAAGAAAGCA-TG--GTTAATGGGTTTCAAGTTCTTCCTTCACAGGAAGAATCTGT 607
||| || ||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 546 AGTGAAGGAAAGCATTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGT 605
Query 608 GAGACGTATATTTGAAAGACATCCAGACATTGTGGTAG-ACTTCCGTGCAAAGAACCAAC 666
||||||||| ||| ||| |||||||||||||| |||| | |||| | |||||||||||
Sbjct 606 GAGACGTATTTTTAAAAAACATCCAGACATTGCAGTAGGA-TTCCAAGTAAAGAACCAAC 664
Query 667 AGCTCAGGACAACATGGATGAATTTC-TTGCTCAGCTTGATCGAGACGCTGTGC-AAGTC 724
| || |||| ||||| ||||||||| ||| ||| | | || |||||| ||||| || ||
Sbjct 665 ATCTGAGGAAAACATTCATGAATTTCCTTG-TCAACGTAATTGAGACGATGTGCCAA-TC 722
Query 725 AATTCAGGAGCTTTCCAATGACGATCTTGTGGATGCAGACATTGCGCTGACACACTTGAA 784
| |||||||| || ||||| ||||||||||| | |||||||||| ||||| |||||||
Sbjct 723 TCTCCAGGAGCTCTCAAATGAAGATCTTGTGGAAGTAGACATTGCGTTGACATACTTGAA 782
Query 785 AGCTGTGA-ACTTTAAGGTAGATTGGCTGGAAAAGAAGCTTGATCAAGTaaaagaaaaga 843
|| || | | |||||||| |||||| | || |||||||| || || || ||||||||||
Sbjct 783 AGATGCGGGA-TTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCATGTGAAAGAAAAGA 841
Query 844 aaaagaaagaaCTGTCTG-TTGTGGCCCA-ACTCCAAGAAACAGAAG-AA-AATATTC-T 898
| ||||||||| ||||| || || | | |||||||| || ||| | || || ||| |
Sbjct 842 AGGAGAAAGAACAGTCTGGTT-TGATC-ATACTCCAAGGAATAGA-GCAACAAC-TTCAT 897
Query 899 GAAATTGAAGCAAAAGT 915
||| |||| ||| ||||
Sbjct 898 GAA-TTGATGCACAAGT 913
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 244 bits (132), Expect = 9e-64
Identities = 316/402 (79%), Gaps = 24/402 (6%)
Strand=Plus/Plus
Query 353 TCTTACCAAACTTCATGACAAAGATGAAGGATTTCTTGTGAACGATGAACTCATTATTGT 412
||||||||||||| ||| |||| ||| ||||||||||||||| ||||| ||| |||||
Sbjct 318 TCTTACCAAACTTAATGCCAAACATGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGT 377
Query 413 TGCTGAGGTAGATGTTCTTGAAGTTATTGGCACATTGGATGTGTC--AGTGAAATCTAAA 470
||| |||||||||||||||||||||||||||| ||| ||||| || || | ||||| ||
Sbjct 378 TGCGGAGGTAGATGTTCTTGAAGTTATTGGCAAATTAGATGTTTCTAAG-G-AATCTCAA 435
Query 471 GA-GTCAAGCCGCCCTCTGAAAAAGATAAAGCTAAATGAG-GAT--T-GTGCGGAGTCTA 525
|| || || |||| ||||| ||| | |||| ||| | ||| | |||||| |||||
Sbjct 436 GAGGT-AATTAAACCTCGGAAAAGGATGAGGCTATATG-GTGATGGTGGTGCGGTGTCTA 493
Query 526 ATGAGTCG-ATCAAGGAAGCTTCATCAGTAAAAGAAAGCATGGTTAATGGGTTTCAAGTT 584
| | | | | ||||||| |||||||||| || || || |||||||||||||||
Sbjct 494 GTCATTTGCA-CAAGGAAACTTCATCAGT-------AG-AT-GTCAATGGGTTTCAAGTT 543
Query 585 CTTCCTTCACAGGAAGAATCTGTGA-GACGTATATTTGAAAGACATCCAGACATTGTGGT 643
||||||||||||| |||||||||| | |||||||| |||||||| ||| |||| | |
Sbjct 544 CTTCCTTCACAGGCGGAATCTGTGAAG-CGTATATTCGAAAGACACCCATACATGGCATT 602
Query 644 AGACTTCCGTGCAAAGAACCAACAGCTCAGGACAACATGGATGAATTTCTTGCTCAGCTT 703
||| ||||| ||||||||||||||| | ||| || |||| || ||| || | |||||| |
Sbjct 603 AGAGTTCCGAGCAAAGAACCAACAGTTGAGGGCATCATGTATAAATGTCCTCCTCAGCCT 662
Query 704 GATCGAGACGCTGTGCAAGTCAATTCAGGAGCTTTCCAATGA 745
||| ||||| ||||| ||||| | || || |||||| |||
Sbjct 663 AATCAAGACGTTGTGCCAGTCACTGCAAGATATTTCCATTGA 704
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 239 bits (129), Expect = 4e-62
Identities = 265/328 (81%), Gaps = 19/328 (6%)
Strand=Plus/Plus
Query 345 ATGATCCCTCTTACCAAACTTCATGACAAAGATGAAGGATTTCTTGTGAAC-GATGAACT 403
|||||||||||| |||| ||||||| |||| ||| || | |||||||||| || ||| |
Sbjct 1 ATGATCCCTCTTCCCAACCTTCATGCCAAAAATGCTGGGTATCTTGTGAACGGA-GAAGT 59
Query 404 CATTATTGTTGCT-GAGGTAGATGTTCTTGAAGTTATTGGCACA-TTGGATGTGTCAGTG 461
|| ||||||| | ||| || ||| ||||||||||||||||| | || ||||| ||||
Sbjct 60 CAAGATTGTTG-TGGAGATAAATGATCTTGAAGTTATTGGCA-AGTTAGATGTATCAG-A 116
Query 462 A-AATCTAAAGAGTCAAGCCGCCCTCTGAAAAAGATAAAGCTAAATGAGGATTG-TGCGG 519
| ||||| ||||| ||| || ||||||||||||||||||||| |||| | || ||| |
Sbjct 117 AGAATCTGAAGAGACAAACCAACCTCTGAAAAAGATAAAGCTAGATGA-TAATGATGCAG 175
Query 520 AGTCTAATGAGTCGATCAAGGAAG-CTTCATCAGTAAAAGAAAGCA-TG--GTTAATGGG 575
|||| ||| || |||| | || ||||| ||||||| ||||||| || || ||||||
Sbjct 176 TGTCTTTTGATTCTCTCAACG-AGACTTCACCAGTAAAGGAAAGCATTGATGTCAATGGG 234
Query 576 TTTCAAGTTCTTCCTTCACAGGAAGAATCTGTGA-GACGTATATTTGAAAGACATCCAGA 634
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 235 TTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGT-GTATATTTGAAAGACATCCAGA 293
Query 635 CATTGTGGT-AGACTTCCGTGCAAAGAA 661
| ||| | | | |||||| |||||||
Sbjct 294 CTTTGCA-TCAAAATTCCGTCCAAAGAA 320
> AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604871-21606229
REVERSE LENGTH=987
Length=987
Score = 189 bits (102), Expect = 4e-47
Identities = 203/250 (81%), Gaps = 14/250 (6%)
Strand=Plus/Plus
Query 3 GAATC-TTTATTACATTTGATGGCTAAGCATGTTGGTAAGAAGTTCACTTGGGTGATAAA 61
||||| |||| |||| | ||| | ||||| ||||||||||||||| |||||||||||||
Sbjct 46 GAATCTTTTACTACA-TCAATGACCAAGCAAGTTGGTAAGAAGTTCGCTTGGGTGATAAA 104
Query 62 GAACTTCTCCTCTTTGCAATCTGAGAAACGTATTTATTCTGCTCCGGTCCTGATAGGTGA 121
|||||||||||||||||||| | |||| || ||||||||| ||| ||| ||| |||||
Sbjct 105 GAACTTCTCCTCTTTGCAATGTAAGAA--GT-TTTATTCTGTTCCATTCCAGATTGGTGA 161
Query 122 CTGCAAATGGCGTCTTTGTG-CATATCCCAAGGGATACCAGGTCGTTGATTACTTCTCTC 180
||||||||||||||||| | | ||||| || ||| || | | | |||||||| ||||
Sbjct 162 CTGCAAATGGCGTCTTTCTATC-TATCCAAAAGGAAACAAC-T-GC-GATTACTTGTCTC 217
Query 181 TGTTTCTGCAAAGT-GTTGATTATGAATCATTGCCTTCCGGATGGAGTAGAAACGTTAAA 239
|||||||| || || | ||||| | ||||| | ||||| |||||||| ||| |||| |||
Sbjct 218 TGTTTCTGGAA-GTCGCTGATTTTAAATCACTACCTTCTGGATGGAGAAGATACGTAAAA 276
Query 240 -TATCGGCTA 248
| |||||||
Sbjct 277 CT-TCGGCTA 285
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 185 bits (100), Expect = 6e-46
Identities = 304/398 (76%), Gaps = 31/398 (8%)
Strand=Plus/Plus
Query 465 TCTAAAGAGTCAAGCCGCCCTCTGAAAAAGATAAAGCTAAATGAGGATTGTGCGGAGTCT 524
||| ||||| |||| | ||||| |||||||| ||| ||||| ||| ||| | |||||
Sbjct 870 TCTGAAGAGGGAAGCAGACCTCTTAAAAAGATTAAGAGGAATGATGATGGTGTGAAGTCT 929
Query 525 AATGAGTCGA-TCAAGGAAG-CTTCATC-AGTAAAAGAAAGCATGG-T-T-AATGGGTTT 578
||||| || | |||| ||| | ||| | ||| || |||| ||||| | | |||||||||
Sbjct 930 AATGATTC-AGTCAA-CAAGAC-TCAACAAGTGAAGGAAACCATGGATATCAATGGGTTT 986
Query 579 CAAGTTCTTCCTTCACAGGAAGA-ATCT-GTGAGACGTATATTTGAAAGACAT-CC-AGA 634
||||||||||||||||||| || | || ||||| ||||| ||| ||| | || || |||
Sbjct 987 CAAGTTCTTCCTTCACAGGT-GACA-CTTGTGAGCCGTAT-TTTAAAAAA-ATACCCAGA 1042
Query 635 CATTGTGGTAG-ACTTCCGTGCAAAGAACCAACAGCTCAGGACAACATGGATGAATTTCT 693
||||| ||| | ||| ||||||||||| ||| || |||||| |||| |||||| ||
Sbjct 1043 CATTGCATTAGGA-TTCAATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCC 1101
Query 694 TGC-TCAGCTTGATCGAGACGCTGTGCAAGTCAATTCAGGAGCTTTCCA-ATGACGATCT 751
| | ||||| | |||||||| |||||| ||||| |||||||| || | | || ||| |
Sbjct 1102 T-CATCAGCCTAATCGAGACACTGTGCCAGTCACCACAGGAGCTCTC-AGACGAAGATAT 1159
Query 752 TG-TGGATGCAGACATTGCGCT-GACACACTTGAAAGCTGT-GAACTTTAAGGTAGATTG 808
| || | ||||||| ||| || | | || || ||| || | ||||||||| |||||
Sbjct 1160 GGATGAA-GCAGACAATGCACTAGT-ATACGTGCAAGATGCAGG-CTTTAAGGTGGATTG 1216
Query 809 GCTGGAAAAGAAGCTTGATC-AAGTaaaagaaaagaaa 845
| |||| |||||||| || |||||||||||||||||
Sbjct 1217 GTTGGACAAGAAGCT-GAAGGAAGTAAAAGAAAAGAAA 1253
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 113 bits (61), Expect = 3e-24
Identities = 149/189 (79%), Gaps = 15/189 (8%)
Strand=Plus/Plus
Query 539 GGAAGCTTCATCAGTAAAAGAAAGCAT-G--GTTAATGGGTTTCAAGTTCTTCCTTCACA 595
|||| |||||| ||| | |||||||| | || ||||||||||||||||||||||||||
Sbjct 303 GGAAACTTCATTAGTGATGGAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACA 362
Query 596 GGAAGAATCTGTGA-GACGTATATTTGAAA-GACATCCAGACATTG--TGGTAGACTTCC 651
|| ||||||||||| || || | ||||||| | || |||||||||| | | | | ||||
Sbjct 363 GGTAGAATCTGTGAAGA-GTTTGTTTGAAAAG-CACCCAGACATTGCATCGAA-A-TTCC 418
Query 652 GTGCAAAGAACCAACAGCTCAGGACAACATGGATGAATT-TCTTGCTCAGCTTGA-TCGA 709
|| ||||||||| ||| || || ||||||| ||||| ||| || ||||||| | ||
Sbjct 419 GTCCAAAGAACCCACATCTGAGAACAACATCCTTGAATAGTCTA-CTAAGCTTGACT-GA 476
Query 710 GACGCTGTG 718
|| |||||
Sbjct 477 GATTCTGTG 485
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 100 bits (54), Expect = 2e-20
Identities = 257/351 (73%), Gaps = 30/351 (9%)
Strand=Plus/Plus
Query 534 ATC-AAGGAAGCTTCATCAGTAAAAG-AAAGCAT-G--GTTAATGGGTTTCAAGTTCTTC 588
||| |||||| ||||| || | || | ||| ||| | || |||||||||||||||||||
Sbjct 599 ATCAAAGGAATCTTCACCAAT-AATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTC 657
Query 589 CTTCACAGGAAGAATCTGTGA-GACGTATATTTGAAAGACATCC-AGACATTGTGGT-AG 645
||||||||| ||| ||||||| | ||| | ||||||| | | || ||| ||||| | |
Sbjct 658 CTTCACAGGTAGATTCTGTGAAG-CGTTTGTTTGAAAAAAA-CCTAGATATTGTA-TCAA 714
Query 646 ACTTCCGTGC--AAAGAA-CCAACAGCTCAGGACAACATGGATGAATTTCTTGCTCAGCT 702
| || ||| | ||| || ||| | | | ||| | || |||||| || | || || |
Sbjct 715 AATTTCGT-CTTAAA-AATCCAT-ATTTGAAGACTGCGTGCATGAATCTCCTCCTGAGTT 771
Query 703 TGATCGAGACGCTGTG-CAAGTCAATTCAGGAGCTTTCCAATGACGATCT-TGTGGATGC 760
| | ||| |||||||| ||| || ||| || || |||||||| | ||| | || ||||
Sbjct 772 TAACCGAAACGCTGTGTCAA-TCGCCTCAAGAACTCTCCAATGATGGTCTCTCTG-ATGC 829
Query 761 AGACATTGCGCTGACACACTTGAAAG---CTGTGAACTTTAAGGTAGATTGGCTGGAAAA 817
|| |||| ||| || | |||| || | | | ||| ||| | |||||| |||| ||
Sbjct 830 AGGTGTTGCACTGGCATATTTGATAGAAACAGGG--CTT-AAGTTGGATTGGTTGGAGAA 886
Query 818 GAAGCTTGATCAAGTaaaagaaaagaaaaagaaagaaCTGTCT-GTTGTGG 867
||| |||||| || |||| |||||||| ||||||||| |||| ||| |||
Sbjct 887 GAAACTTGATGAATTAAAGGAAAAGAAGAAGAAAGAAGAGTCTTGTT-TGG 936
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 91.6 bits (49), Expect = 1e-17
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 570 AATGGGTTTCAAGTTCTTCCTTCACAGGAAGAATCTGTGA-GACGTATATTTGAAAGACA 628
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| | |
Sbjct 630 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAG-CGTATATTTGAAATATA 688
Query 629 TCCAGACATTG 639
||| ||||||
Sbjct 689 CCCAAACATTG 699
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 86.1 bits (46), Expect = 6e-16
Identities = 105/132 (80%), Gaps = 9/132 (7%)
Strand=Plus/Plus
Query 538 AGGAAGCTTCATCAGTAAAAGAAAGCAT-GGT-T-AATGGGTTTCAAGTTCTTCCTTCAC 594
||||| ||| || ||| | |||||||| | | | |||||||||||||||||||||||||
Sbjct 440 AGGAAACTTTATTAGTTCATGAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCAC 499
Query 595 AGGAAGAATCTGTGAGACG-TATATTTGA-AAGACATCCAGACATTGTGGT-AGACTTCC 651
||| ||||||||||| || | | ||||| ||| || |||||||| || | ||| || |
Sbjct 500 AGGTAGAATCTGTGA-ACAATCTCTTTGAGAAG-CACCCAGACATCGTA-TCAGAATTTC 556
Query 652 GTGCAAAGAACC 663
|| | |||||||
Sbjct 557 GTTCCAAGAACC 568
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 82.4 bits (44), Expect = 8e-15
Identities = 84/102 (82%), Gaps = 7/102 (7%)
Strand=Plus/Plus
Query 538 AGGAAGCTTCATCAGTAAAAGAAAGCATG---GTTAATGGGTTTCAAGTTCTTCCTTCAC 594
||||| |||||| ||| | ||||||||| || |||||||||||||||||||||||||
Sbjct 116 AGGAAACTTCATTAGTGATGGAAAGCATGTATGTCAATGGGTTTCAAGTTCTTCCTTCAC 175
Query 595 AGGAAGAATCTGTGA-GACGTATATTTGAAA-GACATCCAGA 634
||| ||||| ||||| || || | ||||||| | || |||||
Sbjct 176 AGGTAGAATTTGTGAAGA-GTCTGTTTGAAAAG-CACCCAGA 215
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 75.0 bits (40), Expect = 1e-12
Identities = 62/72 (86%), Gaps = 4/72 (6%)
Strand=Plus/Plus
Query 570 AATGGGTTTCAAGTTCTTCCTTCACAGGAAGAATCTGTGAGACGTATAT-TTGAAAGA-C 627
|||||||||||||||||||||||||||| ||||||||||| || || | || ||| | |
Sbjct 466 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-ACA-ATCTCTTCAAAAATC 523
Query 628 ATCCAGACATTG 639
| ||||||||||
Sbjct 524 ACCCAGACATTG 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5