BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924374
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56620.1 | Symbols: | Plant invertase/pectin methylesterase... 708 0.0
> AT1G56620.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:21219818-21220357 FORWARD
LENGTH=540
Length=540
Score = 708 bits (383), Expect = 0.0
Identities = 490/542 (90%), Gaps = 6/542 (1%)
Strand=Plus/Plus
Query 1 TGGATTTTCTTGAACGAATCTCTTTGATGATCACATCTTTGATCATCCTCCACACAATCC 60
||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 2 TGGGTTTTCTTCAACGAATCTCTTTGATGATCACATCTTTGATCATTCTGCACACTATCC 61
Query 61 CATCGACCACATCGACCCCAATCACACCAGACGCCCCAACAATGATTCTAATCGATAGCA 120
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CATCGACCACATCCATCTCAATCACACCAGACGCCCCAACAATGATTCTAATCGATAGCA 121
Query 121 TATGCGTCAACACCAGGAACATGTATTTTTGTGAGCAAACG-ATCATCTCGAAACTCGAT 179
|||| |||||||||| ||||||||||| ||||||||||| | |||||||||||||||| |
Sbjct 122 TATGTGTCAACACCAAGAACATGTATTATTGTGAGCAAA-GTATCATCTCGAAACTCGGT 180
Query 180 AACCCCCACGCAGACATCAAGATCATATC-GAAAATCGCAGCGTTCAACGCAGTGTACAT 238
|||||||| ||||| ||||||| |||| | | | |||||||||||||||||||||||| |
Sbjct 181 AACCCCCATGCAGAAATCAAGACCATAGCTG-ATATCGCAGCGTTCAACGCAGTGTACCT 239
Query 239 CACCACAACAGCAGGTAATCT-CATTAGAGATGAATTTATTCCCAAAGCAGAGAATCCTC 297
|| ||||| ||||| ||| | |||||||||| |||||||||||| ||||||||| ||||
Sbjct 240 CATCACAAGTGCAGGCAAT-TACATTAGAGATAAATTTATTCCCATAGCAGAGAACCCTC 298
Query 298 TTGTCAAGACCCAACTTGTTCATTGCCAGGCAACGTACAGAGCTGTACAAAAGCTTCTCG 357
| ||||||| ||| ||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 299 TGGTCAAGAACCAGCTTGTTCTTTGCCTTGCGACGTACAGAGCTGTACAAAAGCTTCTCG 358
Query 358 AAGGTGCTTATATGGCACACTTACGCGGTGATTATTCGGATATGAGACACTATCAATCAA 417
||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 359 AAGGTGCTTATCTGGCAGACCGCCGAGGTGATTATTCGGATATGAGACACTATCAATCAA 418
Query 418 GTGTGCTTGGTATGCTAGATAGCTGTAAAACAGATTTTGATCATATGGTGCGTACAAATT 477
|||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 419 GTGTGCTTGGTATGCTCGATAATTGTAAAACAGATTTTGATTATATGGTGCGTACAAATT 478
Query 478 GGTGGGTTAGGTTAACGATCAATATCTCTTTATTAGCAACTCGTCAGCTCCCTGGAAAAT 537
|| |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 479 GGGGGGTTAGGTTAATGATCAATATCTCTTTATTAGCAACTCGTCAGCTCCCTGCACAAT 538
Query 538 AA 539
||
Sbjct 539 AA 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5