BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924387
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36840.1 | Symbols: | Galactose oxidase/kelch repeat superf... 261 1e-68
> AT4G36840.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:17351353-17352945 FORWARD LENGTH=1593
Length=1593
Score = 261 bits (141), Expect = 1e-68
Identities = 611/828 (74%), Gaps = 71/828 (9%)
Strand=Plus/Plus
Query 141 GATTCGGTGGTTGTGAACTGCCTTGCTCAG-TTGTCGAGATTGGACCTCGTGGCCTTAGC 199
||||| |||| ||||| ||| | |||| | | ||||||||||||| |||||| |
Sbjct 435 GATTCTGTGGCTGTGAGTTGCATGGCTC-GCGTCTCGAGATTGGACCAAACAGCCTTATC 493
Query 200 TATCGCCTCCAAG-AATCACCGGTCTCTGGTGGTTTCCCCTGAGCTCAGGGA-CTTGAGA 257
| ||| ||||||| ||| |||| ||||| || |||||||||||| | | | | ||
Sbjct 494 TCTCG-CTCCAAGAAAT-ACCGCTCTCTCGTAACATCCCCTGAGCTC-TGCAGCACGCGA 550
Query 258 TGGCAGCA--GCGTTGCA-TGGAGCCATCTCTCTACGTATGCTTGCGCATCTTTCCAGAA 314
| || | | | |||||| | ||||||||| ||| ||| |||||||||||||| || ||
Sbjct 551 TCGCTG-ATTG-GTTGCACT-GAGCCATCTTTCTTCGTCTGCTTGCGCATCTTACCTGAT 607
Query 315 CCAAGCCCACGCTGGTTCATCCTCCACCCCATGCA-ACGTTGGCTGAAACCGAT-CCATA 372
|||| ||| ||||||||| |||| | | | | ||| | |||| ||| | ||||
Sbjct 608 CCAACCCCTCGCTGGTTCGTCCT-TA---CGGGTAGTCGTCGACTGAGGCCGGTCCCAT- 662
Query 373 TGGACTTGTATCAGGCTCCGAAATCAGCCTCCTCTTTTGTAGTGA-TGGGTTGTGGCA-- 429
| || |||||||||||| ||||| || |||||||| || | || ||| || |
Sbjct 663 CGCACCCCTATCAGGCTCCGGAATCA---TCTTCTTTTGTGGT-AGTGAATTGGGGGATC 718
Query 430 TAT-TTAT-T-ATTGGTGGACTCGTAGACGGCAAACCCACTTCCGAAGTCTCCTTTTTCG 486
||| |||| | || |||||| || || ||||||| ||||||||||| |||| || ||
Sbjct 719 TATGTTATGTAATCGGTGGAATCATAAACGGCAATCCCACTTCCGATGTCTTGTTCCTCA 778
Query 487 ATTGTTTCGAGCACAGATGGTATCGCATGCCGCCAATGAAGATGGCTCGTGCTTCCGCAT 546
| ||||| || | |||| | ||| | ||| | |||||||||||||||||||||||||
Sbjct 779 ACTGTTTTTCTCAGACATGGCACCGCGTCCCGTCTATGAAGATGGCTCGTGCTTCCGCAT 838
Query 547 CGGCAAGCCTGAT-GACAGATTCGAAGATATATGTGTTTGGAGGGTGCGGGGAAGATGTC 605
|||||||||| || ||| | |||||| || || |||||||||||| || || |
Sbjct 839 CGGCAAGCCTCATAGACGG----GAAGATCTACGTTTTTGGAGGGTGCCCAGAGGA---C 891
Query 606 GCCAATTCCTCAAACTGGGCAGAGGTGTTCGATGTCACT--ACCCTAACTTGGGGTTTCT 663
|| |||||||||||||||| ||||| |||||| || | ||| |||||||||| | |
Sbjct 892 GCTGATTCCTCAAACTGGGCGGAGGTATTCGATC-CAGTTTACCA-AACTTGGGGTATAT 949
Query 664 TGTATGTGTTTACGCCCAAGATGCCCCTTAATATCCAAC-AAAGTGTGGTAATGATAAAA 722
| || | ||||| |||||| ||| || |||| ||| |||||||||| |||| |
Sbjct 950 T-TAA-T----ACGCCGAAGATGGCCCATAGTATC-AACCAAAGTGTGGT---GATAGAG 999
Query 723 GAGAAGGAGGTTTACGTAGTGGATGAGGATGGTCAAAA-CTTCT--CTTTCTCACCAAGT 779
|||||| ||||||||| ||||||||||| || | ||| ||| | ||| || ||||||
Sbjct 1000 GAGAAGAAGGTTTACGCCGTGGATGAGGA-GGACCAAAGCTT-TAGCTT-CTTGCCAAGT 1056
Query 780 AAATGTATGTTTGTGGCAAGG-GGCAAAACAGATTCTATACC-AGGAAACATTTACAGAA 837
|| ||| | | ||| || | || |||| |||||||| | ||||| | | ||
Sbjct 1057 GAAGGTA-GAATCTGGAAAAGCGGAAAAAAAGATTCTA-AGGTAGGAAG--T--A--GAC 1108
Query 838 ACGATTGGTGTGTCATTGGGACATT-CTTATTTTGTCGTGGTACTCGCGGAAGAATACTG 896
||||||||||||||||||||| ||| || || ||||||| ||||||||| ||||||||
Sbjct 1109 ACGATTGGTGTGTCATTGGGAAATTACT-ATACTGTCGTGCTACTCGCGGTAGAATACTA 1167
Query 897 TGGTGTTTGCCCTATGAGTTGCATTGGAAGGAAGTCAAGGGTTTGGAA 944
||||| || |||||||| | ||||| || || || |||||||||
Sbjct 1168 TGGTGCCAACCAGATGAGTTGGACTGGAAAGAGGTAAAAGGTTTGGAA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5