BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924417

Length=793
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78920.1 | Symbols: AVP2, AVPL1, AtVHP2;1, VHP2;1, VP2 | vac...   207    1e-52


> AT1G78920.1 | Symbols: AVP2, AVPL1, AtVHP2;1, VHP2;1, VP2 | vacuolar 
H+-pyrophosphatase 2 | chr1:29671493-29676992 FORWARD 
LENGTH=3093
Length=3093

 Score =  207 bits (112),  Expect = 1e-52
 Identities = 166/189 (88%), Gaps = 15/189 (8%)
 Strand=Plus/Plus

Query  436   TGCGGGTCTCCAGTGCCGTCGGACGATCTTCGAGAGAAGCATTGC----AGCCGTTCGTG  491
             |||||||||||||||| | | |||||||| |||||||||||||||    |||||||||||
Sbjct  1010  TGCGGGTCTCCAGTGCTGCCAGACGATCTGCGAGAGAAGCATTGCAGATAGCCGTTCGTG  1069

Query  492   CTGGTGGGTTTTCAG-CCTGGTTGTAGTTGGTATCATGGTATGGCTGTGATTGGTACT-G  549
             ||||||||||||||| ||||| | | ||| |  |  |||||||||||||||||||| | |
Sbjct  1070  CTGGTGGGTTTTCAGCCCTGG-T-T-GTT-G--T--TGGTATGGCTGTGATTGGTA-TCG  1120

Query  550   CCATCCTCTATTTTACATTTTATGTTTGGTTGGGCATGGATTCACCAGGCTCAATGAATG  609
             |||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct  1121  CCATCCTCTATTCTACATTTTATGTGTGGTTGGGCGTGGGTTCACCAGGCTCAATGAATG  1180

Query  610   TTACTGACC  618
             |||||||||
Sbjct  1181  TTACTGACC  1189


 Score = 97.1 bits (52),  Expect = 2e-19
 Identities = 54/55 (98%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  241  GGCGATGTCTGCCTATATTACTGTTGCTGCATTTCTTTTGGGGGCTCTATGCTCA  295
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  909  GGCGATGTCTGCTTATATTACTGTTGCTGCATTTCTTTTGGGGGCTCTATGCTCA  963



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38579824896


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5