BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924423

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18465.1 | Symbols:  | RNA helicase family protein | chr4:10...   309    1e-83
  AT1G57740.1 | Symbols:  | pseudogene, putative cytochrome P450,...   121    7e-27


> AT4G18465.1 | Symbols:  | RNA helicase family protein | chr4:10197056-10201611 
FORWARD LENGTH=2088
Length=2088

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 265/309 (86%), Gaps = 20/309 (6%)
 Strand=Plus/Plus

Query  21    GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATACAGCTAAAAGCTTTAGGG-ATAG  79
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct  1260  GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATACAGCTAAAAGCTTT-GGGCATAG  1318

Query  80    ATAATATCTT-GGTTTTAAATGGCCTGCACCTCGGTC-CCATGAA-CAATGATCCGGAGC  136
             |||||||||| |||||  | |||||||||||||  ||  | |||| ||||||| | ||||
Sbjct  1319  ATAATATCTTGGGTTTCGATTGGCCTGCACCTCCATCGTC-TGAAGCAATGATTC-GAGC  1376

Query  137   ACTTGAAGTACTTTATTCACTACAAATCCGAGCATGATGATGCTAAACTCACTTCGCCAA  196
             ||||||||||||||||||||| || ||||  | |||||||||||||||||||||||||||
Sbjct  1377  ACTTGAAGTACTTTATTCACTTCAGATCCTCG-ATGATGATGCTAAACTCACTTCGCCAA  1435

Query  197   CAGGATTCCAAGTTGCAAAACTTGTACTGTTTCTACATGTCTCCATTTCATCGTCGAAAA  256
             ||||||||||||||||| |||||  ||||   | | |||  |  ||  ||      ||||
Sbjct  1436  CAGGATTCCAAGTTGCAGAACTTCCACTGGACCCA-ATGA-T--AT--CA------AAAA  1483

Query  257   TGACTTTGGCTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTGCAACCGCTGCAGTTC  316
             ||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct  1484  TGATTTTGGCTTCAAGTGAGCTTGGTTGTTCACATGAGATCATTACAATCGCTGCAGTTC  1543

Query  317   TCTCTATCC  325
             ||||| |||
Sbjct  1544  TCTCTGTCC  1552


> AT1G57740.1 | Symbols:  | pseudogene, putative cytochrome P450, 
blastp match of 77% identity and 2.0e-12 P-value to GP|8096593|dbj|BAA96166.1||AP002092 
unnamed protein product {Oryza 
sativa (japonica cultivar-group)} | chr1:21382131-21383304 
FORWARD LENGTH=1174
Length=1174

 Score =  121 bits (65),  Expect = 7e-27
 Identities = 73/77 (95%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  250  TCGAAAATGACTTTGGCTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTGCAACCGCT  309
            |||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct  428  TCGAAAATGATTTTGACTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTGTAATCGCT  487

Query  310  GCAGTTCTCTCTATCCT  326
            |||||||||||||||||
Sbjct  488  GCAGTTCTCTCTATCCT  504


 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 55/56 (98%), Gaps = 1/56 (2%)
 Strand=Plus/Plus

Query  3   TTCTCAACCAAATGCCTGGGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATAC  58
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1   TTCTCAACCAAATGCCT-GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATAC  55



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20458973843


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5