BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924425
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:10... 159 1e-38
AT1G57740.1 | Symbols: | pseudogene, putative cytochrome P450,... 69.4 2e-11
> AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:10197056-10201611
FORWARD LENGTH=2088
Length=2088
Score = 159 bits (86), Expect = 1e-38
Identities = 139/162 (86%), Gaps = 13/162 (8%)
Strand=Plus/Plus
Query 99 TCC-CGATGATGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCAC 157
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TCCTCGATGATGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCAC 1462
Query 158 TGTTTCTACATGTCTCCATTTCATCGTCGAAAATGATTTTGGCTTCAAGTGAGCTTGGTT 217
|| | | ||| | || || |||||||||||||||||||||||||||||||
Sbjct 1463 TGGACCCA-ATGA-T--AT--CA------AAAATGATTTTGGCTTCAAGTGAGCTTGGTT 1510
Query 218 GTTCTGATGAGATCATTGCAACCGCTGCAGTTCTCTCTATCC 259
|||| ||||||||||| ||| |||||||||||||||| |||
Sbjct 1511 GTTCACATGAGATCATTACAATCGCTGCAGTTCTCTCTGTCC 1552
Score = 63.9 bits (34), Expect = 1e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 58 GATGCAGAGGTCGAATCTTGTTTCTACTGTAAAACAG 94
|||||||||||||||||||||||||||||||| ||||
Sbjct 1263 GATGCAGAGGTCGAATCTTGTTTCTACTGTAATACAG 1299
Score = 56.5 bits (30), Expect = 2e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 334 AGAACAAGATGAAGCAAAACTGAGATTTTCAGC 366
|||||||||||||||||||||||||||| ||||
Sbjct 1587 AGAACAAGATGAAGCAAAACTGAGATTTGCAGC 1619
> AT1G57740.1 | Symbols: | pseudogene, putative cytochrome P450,
blastp match of 77% identity and 2.0e-12 P-value to GP|8096593|dbj|BAA96166.1||AP002092
unnamed protein product {Oryza
sativa (japonica cultivar-group)} | chr1:21382131-21383304
FORWARD LENGTH=1174
Length=1174
Score = 69.4 bits (37), Expect = 2e-11
Identities = 49/54 (91%), Gaps = 3/54 (6%)
Strand=Plus/Plus
Query 286 GGATGCAATCTTAAAC--A-TATTACTTTGCAGTCCGTTTGGGTCATTGCCAGA 336
||||| || ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 624 GGATGTAACCTTAAACATATTATTACTTTGCAGTCCGTTTGGGTCATTGCCAGA 677
Score = 60.2 bits (32), Expect = 1e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 58 GATGCAGAGGTCGAATCTTGTTTCTACTGTAA 89
||||||||||||||||||||||||||||||||
Sbjct 21 GATGCAGAGGTCGAATCTTGTTTCTACTGTAA 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5