BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924435
Length=260
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08025.1 | Symbols: | Protein of unknown function (DUF784) ... 388 1e-107
AT1G57760.1 | Symbols: | Protein of unknown function (DUF784) ... 375 8e-104
AT3G44115.1 | Symbols: | Protein of unknown function (DUF784) ... 353 4e-97
AT3G44117.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 348 2e-95
AT1G45223.1 | Symbols: | Protein of unknown function (DUF784) ... 346 6e-95
AT1G45227.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 315 2e-85
AT1G45225.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 315 2e-85
AT1G45211.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 283 5e-76
> AT4G08025.1 | Symbols: | Protein of unknown function (DUF784)
| chr4:4846798-4847379 FORWARD LENGTH=582
Length=582
Score = 388 bits (210), Expect = 1e-107
Identities = 243/259 (94%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 2 TCCAAGCATAAGaaaaaaaTATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTG 61
|||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 64 TCCAAGCATAAG--AAAAATATGGCTAAACTAATCTCCCATGTTACTGCGCTATTCATTG 121
Query 62 TTGTAGCATTGGTGTGTGCGTTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAA 121
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 122 TTGTAGTTTTGGTGTGTGCGTTTGTTCCTGCTTTTTCTGTAGAAGAAGCTGAAGCAAAAT 181
Query 122 CATTATGGGACACTTGTCTGGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTG 181
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 182 CATTATGGGACACTTGTCTCGTTAAAATCACTCCTAAATGTGCATTGAATATAATCGCGG 241
Query 182 TTGTTTTTGGAAACGGAACCCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGAA 241
||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 242 TTGTTTTTGGAAATGGAACCCTCATTGAGTCTTGTTGCAAGGATCTTGTCCAAGAAGGAA 301
Query 242 AAGTGTGTCACGATAATCT 260
|||||||||||||||||||
Sbjct 302 AAGTGTGTCACGATAATCT 320
> AT1G57760.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:21390003-21390565 FORWARD LENGTH=563
Length=563
Score = 375 bits (203), Expect = 8e-104
Identities = 241/260 (93%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1 TTCCAAGCATAAGaaaaaaaTATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATT 60
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 59 TTCTAAGCATAAGAAAAAAATATGGCTAAACTAAGCTCCCATGTTACTGCGCTATTCATT 118
Query 61 GTTGTAGCATTGGTGTGTGCGTTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAA 120
|||| | | ||||||||||||||| |||||| | |||| || ||||||||||||||||||
Sbjct 119 GTTGCAACTTTGGTGTGTGCGTTTATTCCTGTAATTTCTGTCGAAGAAGCTGAAGCAAAA 178
Query 121 ACATTATGGGACACTTGTCTGGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCT 180
|||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 179 TCATTATGGAACACTTGTCTCGTTAAAATCACTCCTAAATGTGCATTGAATATAATCTAT 238
Query 181 GTTGTTTTTGGAAACGGAACCCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGA 240
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 239 GTTGTTTTTGGAAATGGAACCCTCATTGAGTCGTGTTGCCACGATCTTGTCCAAGAAGGA 298
Query 241 AAAGTGTGTCACGATAATCT 260
||||||||||||||||||||
Sbjct 299 AAAGTGTGTCACGATAATCT 318
> AT3G44115.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:15874991-15875442 FORWARD LENGTH=452
Length=452
Score = 353 bits (191), Expect = 4e-97
Identities = 224/240 (93%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 22 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 81
|||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGGCTAAACTAAGCTCTAATGTTACTGCGCTATTCATTGTTGTAGCTTTGATGTGTGCG 60
Query 82 TTTGTTCCTGCATTTTCAGT-AGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 140
|||||||||| | |||| || | ||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTGTTCCTGTACTTTCTGTCA-AAGAAGCTGAAGCAAAATCATTATGGGACACTTGTCT 119
Query 141 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAATGGAAC 179
Query 201 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGAAAAGTGTGTCACGATAATCT 260
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 180 CCTCATTGAGTCTTGTTGTCACGATCTTGTCCAAGAAGGAAAAGTATGTCACGATAATCT 239
> AT3G44117.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr3:15876726-15877074 FORWARD
LENGTH=349
Length=349
Score = 348 bits (188), Expect = 2e-95
Identities = 224/241 (93%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 22 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 81
|||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTAAACTAAGCACTAATGTTACTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 82 TTTGTTCCTGCATTTTCAGTAG-AAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 140
|||||||||| | |||| || | ||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTGTTCCTGTACTTTCTGT-GAAAGAAGCTGAAGCAAAATCATTATGGGACACTTGTCT 119
Query 141 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAATGGAAC 179
Query 201 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGAAAAGTGTGTCAC-GATAATC 259
|||||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||
Sbjct 180 CCTCATTGAGTCTTGTTGTCACGATCTTGTCCAAGAAGGAAAAGTATGTCACAGATAATC 239
Query 260 T 260
|
Sbjct 240 T 240
> AT1G45223.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17141192-17141771 FORWARD LENGTH=580
Length=580
Score = 346 bits (187), Expect = 6e-95
Identities = 236/260 (91%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 1 TTCCAAGCATAAGaaaaaaaTATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATT 60
||||||||||| | |||| ||||| || |||||||||||||||| |||||||||||||
Sbjct 62 TTCCAAGCATACG--AAAATTATGGTTAGGCTAAGCTCCCATGTTATTGCGCTATTCATT 119
Query 61 GTTGTAGCATTGGTGTGTGCGTTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAA 120
|||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 120 GTTGTAGCTTTGGTGTGTGCGTTTGTTCCTGTATTTTCTGTCGAAGAAGCTGAAGCAAAA 179
Query 121 ACATTATGGGACACTTGTCTGGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCT 180
|||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 180 TCATTATGGAACACTTGTCTAGTTAAAATCACTCCTAAATGTGCATTGAATATAATTTAT 239
Query 181 GTTGTTTTTGGAAACGGAACCCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGA 240
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 240 GTTGTTTTTGGAAATGGAACCCTCATTGAGTCTTGTTGCCACGACCTTGTCCAAGAAGGA 299
Query 241 AAAGTGTGTCACGATAATCT 260
|||||||| || ||||||||
Sbjct 300 AAAGTGTGCCATGATAATCT 319
> AT1G45227.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17144753-17145100 FORWARD
LENGTH=348
Length=348
Score = 315 bits (170), Expect = 2e-85
Identities = 217/240 (90%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 22 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 81
|||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 1 ATGGCTAAGCTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTATGCG 60
Query 82 TTTGTTCCTGCATTTTCAGT-AGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 140
|||||||||| |||||| || | ||||||||||| ||||| |||||||| ||||||||||
Sbjct 61 TTTGTTCCTGTATTTTCTGTCA-AAGAAGCTGAAACAAAATCATTATGGAACACTTGTCT 119
Query 141 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 200
||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||
Sbjct 120 AGTTAAAATCACTCCTAAATGTGCATTAAATATAATTTATGTTGTTTTTGGAAATGGAAC 179
Query 201 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGAAAAGTGTGTCACGATAATCT 260
|||||||||||||||||||||||| |||||||||||| ||||| |||| || ||||||||
Sbjct 180 CCTCATTGAGTCTTGTTGCCACGACCTTGTCCAAGAAGGAAAAATGTGCCATGATAATCT 239
> AT1G45225.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17143007-17143354 FORWARD
LENGTH=348
Length=348
Score = 315 bits (170), Expect = 2e-85
Identities = 216/239 (90%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 22 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 81
||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTAGGCTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 82 TTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTG 141
|||||||||| |||||| || ||||||| |||||||||| |||||||| ||||||||||
Sbjct 61 TTTGTTCCTGTATTTTCTGTCGAAGAAGTTGAAGCAAAATCATTATGGAACACTTGTCTA 120
Query 142 GTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACC 201
||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||
Sbjct 121 GTTAAAATCACTCCTAAATGTGCATTAAATATAATTTATGTTGTTTTTGGAAATGGAACT 180
Query 202 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAATGAAAAGTGTGTCACGATAATCT 260
|||||||||||||||||||||||||||||||||||| | ||||| || || ||||||||
Sbjct 181 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGGAAAGTATGGCATGATAATCT 239
> AT1G45211.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17136065-17136392 FORWARD
LENGTH=328
Length=328
Score = 283 bits (153), Expect = 5e-76
Identities = 198/220 (90%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 41 ATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCGTTTGTTCCTGCATTTTCAG 100
|||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
Sbjct 1 ATGTTATTGCGCTATTCACTGTTGTAGCTTTGGTGTGTGCGTTTGTTCCTGTATTTTTTG 60
Query 101 TAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTGGTTAAAATCACTCCTAAGT 160
| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |
Sbjct 61 TCGAAGAAGCTGAAGCAAAATCATTATGAAACACTTGTCTAGTTAAAATCACTCCTAAAT 120
Query 161 GTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACCCTCATTGAGTCTTGTTGCC 220
|| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 121 TTGAATTGAATATAATTTATGTTGTTTTT-GAAATGGAACCCTCATTGAGTCTTGTTGCC 179
Query 221 ACGATCTTGTCCAAGAATGAAAAGTGTGTCACGATAATCT 260
||||||||||||||||| |||||||||| || ||||||||
Sbjct 180 ACGATCTTGTCCAAGAAGGAAAAGTGTGCCATGATAATCT 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11863188764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5