BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924446
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64690.1 | Symbols: BLT | branchless trichome | chr1:2403803... 1421 0.0
> AT1G64690.1 | Symbols: BLT | branchless trichome | chr1:24038034-24039177
FORWARD LENGTH=1144
Length=1144
Score = 1421 bits (769), Expect = 0.0
Identities = 827/855 (97%), Gaps = 3/855 (0%)
Strand=Plus/Plus
Query 5 AAGGCCAAAGAAAAAGATGAAGGATATGAAGATGCAGAGCAGCTCTGAAACGATGATGAC 64
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 20 AAGGCCAACCAAAAAGATGAAGGATATGAAGATGCAGAGCAGCCCTGAAACGATGATGAC 79
Query 65 CAGAATCCCCACTCCAGATCCTCACAATACCGGTGTACGAGAAGATGCAATGGACACAGT 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 80 CAGAATCCCCACTCCAGATCCTCACAGTACCGGTGTACGAGAAGATGCAATGGACTCAGT 139
Query 125 CTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCA 199
Query 185 TCAGCACCAACGCAAGGCATTTATTTGGGATCTAAACTTCATAAAGATCTTCATGGAATC 244
||| ||||||||||||||||||||||||||||| || ||||||||| | |||||||||||
Sbjct 200 TCAACACCAACGCAAGGCATTTATTTGGGATCTGAATTTCATAAAGGTGTTCATGGAATC 259
Query 245 TGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAG 319
Query 305 GAAAGCTCGAAGGCGCGCAGAGCTGATGAACAAGAGGCTGGCTAAAGATGTGGAGGAGGA 364
||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 320 AAAAGCTCGAAGACGGGCAGAGCTGATGATCAAGAAGCTGGCTAAAGATGTGGAGGAGGA 379
Query 365 GAGAATGGCTAGAGTAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTC 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GAGAATGGCTAGAGAAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTC 439
Query 425 TGAGAAGTCAGAGATGGTTCGGATGAAACGCGATCTTGAAGAAGAGAGACAGATGCACAG 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 440 TGAGAAGTCAGAGATGGTTCGGATGAAACGAGATCTTGAAGAAGAGAGACAGATGCACAG 499
Query 485 GTTAGCAGAGGTTTTGAGAGAAGAGAGACTTCAGATGAAGCTGATGGATGCAAGGCTTTT 544
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 500 GTTGGCAGAGGTTTTGAGAGAAGAGAGAGTTCAGATGAAGCTGATGGATGCAAGGCTTTT 559
Query 545 CTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAA 619
Query 605 TAGGATGATGAAACCAAAGATACTGGAGAGAGCCTGTAGCTCACCGGCTAGGAGGAGCTG 664
||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 620 TAGGATGATGAAACCTAAGATATTGGAGAGAGCGTGTAGCTCACCGGCTAGGAGGAGGTG 679
Query 665 CGAGAATCCACAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAG 724
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CGAGAATCCGCAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAG 739
Query 725 ATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTAAAAATTCT 784
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 740 ATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTCAAAATTCT 799
Query 785 GCTCAGACAAAAGACCACCCCAAGATGTActcctcttctctcctctcctcctcctcctTG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 800 GCTCAGACAAAAGACCACCCCAAGATGTACTCCTCTTCTCTCCTCTCCTCCTCCT--T-G 856
Query 845 ATACTGTATGCTTGT 859
|||||||||||||||
Sbjct 857 ATACTGTATGCTTGT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5