BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924466

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectas...   394    8e-109


> AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated 
and RAD3-related | chr5:16342745-16353898 REVERSE 
LENGTH=9189
Length=9189

 Score =  394 bits (213),  Expect = 8e-109
 Identities = 254/272 (93%), Gaps = 9/272 (3%)
 Strand=Plus/Plus

Query  97    GTAAATACAGATGTAAGGGAAGCATTCTGTGCTCAGATTGGTATCTTCGTACAGCATCCT  156
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2455  GTAAATACAGACGTAAGGGAAGCATTCTGTGCTCAGATTGGTATCTTCGTACAGCATCCT  2514

Query  157   ATTGTGAGCTGTTTGTTTCTTGGTGAAGATGCTACAGAGAAAAGTTGCGAAAGAtttttt  216
             ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||      
Sbjct  2515  ATTGTGAGCTGTTTGTTTCTTAGTGAAGATGCTACGGAGAAAAGTTGCGAAAGA------  2568

Query  217   ttttttttttttAATTTGATTGAGCATTCTCTAGCAACAGCTAAGGATCTTCTTGTCATC  276
                  ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct  2569  ---AATTTTTTTAATTTGATTGAGCATTCTCTAGCAGCAGCTAAGGATCTTCTTGTTATC  2625

Query  277   CAGACTCTATTGGAAACGACAGCTCAAGTTATGGTAGCTGTTGATGTTACCAGTGAGCTT  336
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  2626  CAGACTCTATTGGAAACGACAGCTGAAGTTATGGTAGCTGTTGATGTTACCAGTGAGCTT  2685

Query  337   TTCTTGTTTTGTCTTTTCCTGCTGATTGATCA  368
             |||||| |||||||||||||||||||||||||
Sbjct  2686  TTCTTGATTTGTCTTTTCCTGCTGATTGATCA  2717


 Score =  316 bits (171),  Expect = 2e-85
 Identities = 203/217 (94%), Gaps = 8/217 (4%)
 Strand=Plus/Plus

Query  378   TCGGGCATGCTACATCCACCACGTGAAAGGGGGATTTGCAACTCTACTTTCCAGAG-CTG  436
             |||| ||||||||||   ||||||||||||||||||||||||||||||||||| || || 
Sbjct  2769  TCGGTCATGCTACAT---CCACGTGAAAGGGGGATTTGCAACTCTACTTTCCACAGCCT-  2824

Query  437   CTCATATTCAAAATGACTTGTTTGATAATCTATCTGTCAGGCTGACCAGCCGTCCAAATG  496
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  2825  CTCATATTCAAAATGAGTTGTTTGATAATCTATCTGTCAGGCTGACCAGCCGTCCAAATG  2884

Query  497   TGGTAAGAGAATTTGCAGAAGCTGTTTTGGGTGTTGAAACTGAACAACTTGTGAGGAAAA  556
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  2885  TGGTAAGAGAATTTGCAGAAGCTGTTTTGGGTGTTGAAACTGAAGAACTTGTGAGGAAAA  2944

Query  557   TGGTCCCTG-TCGTTCTTCGTAAGCTCTTGTTG-ATT  591
             ||||||||| | ||||||| |||||||||| || |||
Sbjct  2945  TGGTCCCTGCT-GTTCTTCCTAAGCTCTTGGTGTATT  2980



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41794810304


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5