BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924484
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64440.1 | Symbols: RHD1, REB1, UGE4 | NAD(P)-binding Rossma... 1814 0.0
> AT1G64440.1 | Symbols: RHD1, REB1, UGE4 | NAD(P)-binding Rossmann-fold
superfamily protein | chr1:23937030-23939899 FORWARD
LENGTH=1453
Length=1453
Score = 1814 bits (982), Expect = 0.0
Identities = 1055/1091 (97%), Gaps = 2/1091 (0%)
Strand=Plus/Plus
Query 1 TCATCGCCTCTTGGAGCTTCGATGGTTGGAAATATTCTGGTAACCGGCGGTGCTGGTTAC 60
|||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 52 TCATCGCCTCTTCGAGCTTCGATGGTTGGGAATATTCTGGTGACCGGTGGTGCTGGTTAC 111
Query 61 ATCGGAAGTCACACGGTTCTTCAGCTTCTTCTCGGCGGCTACAACACCGTTGTCATCGAC 120
||||||||||||||||||||||||||||||||||| ||||| |||||||| || || |||
Sbjct 112 ATCGGAAGTCACACGGTTCTTCAGCTTCTTCTCGGAGGCTATAACACCGTCGTTATAGAC 171
Query 121 AACCTCGACAATTCCTCTCTCGTTTCGATCCAACGCGTCAAGGAACTCGCCGGAGATCAT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 172 AACCTCGACAATTCCTCTCTCGTTTCGATCCAACGCGTCAAGGATCTCGCCGGAGATCAT 231
Query 181 GGAAAAAATCTCACCTTCCACCAGGTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTT 240
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GGACAAAATCTCACCGTCCACCAGGTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTT 291
Query 241 TTCTCCGAAACAAAGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTCGGCGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 292 TTCTCCGAAACAAAGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAG 351
Query 301 AGCGTGGCGAAACCGCTTCTGTATTATAACAATAACTTGATTGGGACTATTACACTTTTG 360
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 352 AGCGTGGCGAAACCACTTCTGTATTATAACAATAACTTGATTGCGACTATTACACTTTTG 411
Query 361 GAAGTAATGGCTGCACACGGATGTAAAAAGCTTGTATTTTCTTCGTCCGCTACTGTGTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GAAGTAATGGCTGCACACGGATGTAAAAAGCTTGTATTTTCTTCGTCCGCTACTGTGTAT 471
Query 421 GGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGGATGAGTCCTTAT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 472 GGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTAT 531
Query 481 GGACGGACTAAGCTGTTCATCGAGGACATTTGCCGTGATGTACAACGTGGTGACCCTGAA 540
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 532 GGACGGACAAAGCTGTTCATAGAGGACATTTGCCGTGATGTACAACGTGGTGATCCTGAA 591
Query 541 TGGAGAATCATAATGCTGAGGTACTTTAACCCTGTGGGAGCTCACCCTAGCGGTCGTATT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 TGGAGAATCATAATGCTGAGGTACTTTAACCCTGTGGGAGCTCACCCTAGCGGTCGCATT 651
Query 601 GGTGAGGATCCTTGTGGGACTCCAAATAATCTCATGCCGTATGTCCAGCAAGTCGTTGTT 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 652 GGTGAGGATCCTTGTGGGACTCCAAATAATCTCATGCCTTATGTCCAGCAAGTCGTTGTT 711
Query 661 GGGAGGCTACCTAACCTAAAAATTTATGGAACCGACTATACCACTAAAGATGGCACCGGT 720
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 712 GGGAGGCTACCTAACCTAAAAATTTATGGAACTGACTATACCACTAAAGATGGCACTGGT 771
Query 721 GTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAG 831
Query 781 CTAGACGATACTGAAATAGGTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTAGACGATACTGAAATAGGTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACA 891
Query 841 GTGTTGGAGATGGTTGATGCATTTGAAAAAGCTTCTGGAATGAAAATCCCACTGGTGAAG 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 892 GTGTTGGAGATGGTTGATGCATTTGAGAAAGCTTCTGGAATGAAAATCCCACTGGTGAAG 951
Query 901 GTTGGAAGGAGACCAGGTGATGCAGAAACCGTCTATGCGTCAACAGAAAAAGCTGAACGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTTGGAAGGAGACCAGGTGATGCAGAAACCGTCTATGCGTCAACAGAAAAAGCTGAACGC 1011
Query 961 GAACTAAACTGGAAGGCAAATTTTGGAATCGAAGAAATGTGTAGGGACCAATGGAACTGG 1020
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1012 GAACTAAACTGGAAGGCAAATTTTGGAATCGAAGAAATGTGTAGGGATCAGTGGAACTGG 1071
Query 1021 GCAAGCAACAATCCCTTT-GGATACGGTTCTTCACCAGACACAACATAACGAAGCTAGTA 1079
|||||||||||||| ||| || ||||||||||||||| || |||||||||||||||| |
Sbjct 1072 GCAAGCAACAATCC-TTTCGGTTACGGTTCTTCACCAAACTCAACATAACGAAGCTAATG 1130
Query 1080 CATCCAACACT 1090
||||||||||
Sbjct 1131 TATCCAACACT 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5