BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924488
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64390.1 | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 ... 3149 0.0
> AT1G64390.1 | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2
| chr1:23911119-23915229 FORWARD LENGTH=2660
Length=2660
Score = 3149 bits (1705), Expect = 0.0
Identities = 1838/1904 (97%), Gaps = 2/1904 (0%)
Strand=Plus/Plus
Query 3 TCTCTATCtttttttCAGTCATGGAGAAATTTGCGCCCGTAGCTGCTCTGTTACTGCTTC 62
||||| ||||||||| || |||||||||||||||||| || |||||||||||||||||||
Sbjct 191 TCTCTCTCTTTTTTTTAGCCATGGAGAAATTTGCGCCTGTCGCTGCTCTGTTACTGCTTC 250
Query 63 TTCTCTGTTTTCCGGTAGCTTTCTCCGGTCATGATTATGGTCAAGCTCTTTCAAAGAGTC 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 251 TTCTCTGTTTTCCGGTAGCTTTCTCCGGTCATGATTATGGTCAAGCTCTTTCCAAGAGTC 310
Query 123 TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCGTAACCAGAGAGTCACTTGGC 182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 311 TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCGTAACCAAAGAGTCACTTGGC 370
Query 183 GTTCTCACTCCGGTCTCACCGACGGCAAATCAAGCGGCGTGAATCTGGTCGGAGGTTACT 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCTCTCACTCCGGTCTCACCGACGGCAAATCAAGCGGCGTGAATCTGGTCGGAGGTTACT 430
Query 243 ACGACGCCGGAGACAATGTGAAATTCGGACTACCGATGGCTTTCACGGTGACGATGATGG 302
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 431 ACGACGCCGGAGACAATGTGAAATTTGGATTACCGATGGCTTTCACGGTGACGATGATGG 490
Query 303 CGTGGAGTGTGATTGAATACGGTAATCAGTTACAAGTTAACGGCGAGCTTGGAAACTCCA 362
|||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 491 CGTGGAGTGTGATTGAGTACGGGAATCAATTACAAGCCAACGGCGAGCTTGGAAACTCCA 550
Query 363 TTGACGCCATTAAATGGGGTACTGATTATTTCATCAAAGCCCATCCTGAGCCCAACGTCC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTGACGCCATTAAATGGGGTACTGATTATTTCATCAAAGCCCATCCTGAGCCCAACGTCC 610
Query 423 TTTACGGCGAGGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTTACGGCGAGGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAA 670
Query 483 TGACGACGGACCGTAAAGCATACAGGATAGATCCGAGTAATCCCGGGTCGGATCTTGCCG 542
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGGATCTTGCCG 730
Query 543 GAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTGTTCCGCCGATCTAACCCTGTTT 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 731 GAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTTTTCCGCCGATCTAACCCTGTTT 790
Query 603 ACTCTAGGCTACTACTCACTCACGCCTATCAGTTGTTTGATTTCGCCGACAAATACAGAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACTCTAGGCTACTACTCACTCACGCCTATCAGTTGTTTGATTTCGCCGACAAATACAGAG 850
Query 663 GAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGTGGTTACA 722
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 851 GAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACA 910
Query 723 ATGACGAGTTACTGTGGGCAGCTGCGTGGCTATACCAAGCTTCGAACAATCAGTTCTACT 782
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATGACGAGTTATTGTGGGCCGCTGCGTGGCTATACCAAGCTTCGAACAATCAGTTCTACT 970
Query 783 TGGACTACTTGGGTCGCAACGGTGACGCCATGGGTGGAACCGGTTGGTCTATGACTGAGT 842
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 971 TGGACTACTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGT 1030
Query 843 TCGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAG 902
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAG 1090
Query 903 GCAAAGCAGGAAGGCACGCGCCTGTGTTCAGGAAGTTTCAAGAGAAAGCTGATTCCTTTA 962
||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1091 GCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTATCAAGAGAAAGCTGATTCCTTTA 1150
Query 963 TGTGTTCCTTGTTGGGTAAAAGCTCGAGGAACATTCAGAAGACACCTGGTGGTTTGATTT 1022
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1151 TGTGTTCCTTGTTGGGTAAAAGCTCGAGGAACATTCAGAAGACACCAGGTGGTTTGATTT 1210
Query 1023 TCAGACAACGTTGGAACAATATGCAGTTTGTCACTAGTGCTTCCTTCTTGACCACGGTTT 1082
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1211 TCAGACAACGTTGGAACAATATGCAGTTTGTCACAAGCGCTTCCTTCTTGACCACGGTTT 1270
Query 1083 ACTCTGATTACCTTACTTCTTCGCGAAGCAACTTGAGATGTGCCGCTGGAAATGTTGCTC 1142
|||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| || |
Sbjct 1271 ACTCAGATTACCTAACTTCTTCTCGAAGCAACTTGAGATGTGCCGCGGGAAATGTCGCAC 1330
Query 1143 CTTCGCAGCTTCTTTCCTTTGCTAAATCTCAGGTGGATTATATTCTTGGAGATAACCCGA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 CTTCGCAGCTTCTTTCCTTTGCTAAATCTCAGGTGGATTATATTCTTGGAGATAACCCGA 1390
Query 1203 GAGCAACCAGCTACATGGTTGGTTATGGTAACAATTTCCCTCAGAGAGTTCACCACAGAG 1262
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GAGCTACCAGCTACATGGTTGGTTATGGTAACAATTTCCCTCAGAGAGTTCACCACAGAG 1450
Query 1263 GCTCCTCCATTGTCTCTGTCAAGGTCGACCGTACATTTGTCACATGCCGAGGTGGATATG 1322
|||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1451 GCTCTTCCATCGTCTCTGTCAAGGTGGACCGTACATTTGTCACCTGCCGAGGTGGATATG 1510
Query 1323 CCACGTGGTTTAGCCGTAAAGGCAGCGACCCGAACCTTCTCACTGGCGCTATTGTAGGCG 1382
|||| ||||| |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 1511 CCACTTGGTTCAGCCGTAAAGGCAGTGACCCGAACCTTCTCACTGGTGCTATTGTCGGTG 1570
Query 1383 GTCCTGATGCTTACGACAATTTCGCTGACAGGAGAGATAACTATGAGCAGACTGAGCCTG 1442
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 GCCCTGATGCTTACGACAATTTCGCTGACAGGAGAGATAACTATGAGCAGACTGAGCCTG 1630
Query 1443 CTACTTACAACAATGCACCACTTCTTGGTGTTCTCGCTCGTCTCAGCAGTGGTCATTCCG 1502
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1631 CTACTTACAACAATGCACCACTCCTTGGTGTTCTTGCTCGTCTCAGCAGTGGTCATTCCG 1690
Query 1503 GATATAGTCAGTTTCTTCCAGTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTC 1562
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 GTTATAGCCAGTTTCTTCCAGTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTC 1750
Query 1563 GTAGACCGAAAGTGACTACTCCTGTCCGAGCTTCTGGTCCAGTGGCTATAGTTCAGAGGA 1622
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1751 GTAGACCGAAAGTGACTACTCCAGTCCGAGCTTCTGGTCCAGTGGCTATAGTTCAGAAGA 1810
Query 1623 TAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTA 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 TAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTA 1870
Query 1683 ACAAATCTTCTAGACCTTTGAAAAGTCTCAACCTGTCGATCAAGAATCTCTACGGACCAA 1742
||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1871 ACAAATCTTCTAGACCTCTGAAAAGTCTCAACCTTTCGATCAAGAATCTCTATGGACCAA 1930
Query 1743 TCTGGGGACTCTCGAGATCAGGAAATTCGTTCGGTTTACCCTCGTGGATGCACTCATTGC 1802
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1931 TCTGGGGACTCTCGAGATCAGGCAACTCGTTCGGTTTACCCTCGTGGATGCACTCATTGC 1990
Query 1803 CATCCGGAAAATCCCTAGAGTTCGTCTACATTCACTCAACAACACCTGCCAATGTCGCGG 1862
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1991 CATCCGGAAAATCCCTAGAGTTCGTCTACATTCACTCAACAACACCTGCAAATGTCGCGG 2050
Query 1863 TATCGAGCTACACGTTGGCTTGA-CTAGACTACAACAACAACAT 1905
|||| |||||||| ||||||||| | |||| |||||||||||||
Sbjct 2051 TATCCAGCTACACTTTGGCTTGATC-AGACAACAACAACAACAT 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5