BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924505
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2638 0.0
> AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23866053-23867711 FORWARD LENGTH=1659
Length=1659
Score = 2638 bits (1428), Expect = 0.0
Identities = 1585/1662 (95%), Gaps = 6/1662 (0%)
Strand=Plus/Plus
Query 21 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGAGTTCTCGAGGAAATTTCAAACG 80
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGAGTTCACGAGGAAAATTCAAACG 60
Query 81 AGATTGAGTACCCAGAAACTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGTGACCCG 140
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AGATTGAATACCCAGAAGCTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGCGACCCA 120
Query 141 TATTTCGCGACGCAACTTGTTAGATTCTATGCGTTAAACGATGATCTCGTGTCTGCTCGC 200
||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 121 TATTTCGCGACGCAACTTGCCAGATTCTATGCGTTAAACGATGATCTTATATCTGCTCGC 180
Query 201 AAACTGTTCGACGTATTTCCTGAGAGAAGTGTTTTCCTCTGGAACTCTATTATTCGAGCT 260
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AAACTGTTCGACGTATTTCCTGAGAGAAGTGTTTTCCTTTGGAACTCTATTATTCGAGCT 240
Query 261 TATGCTAAAGCTTATCAATTTAGTACT-TCTTTGTCACTCTTCTCTCAGATGCTGAGTTC 319
|||||||||||| ||||||||| |||| | |||||||||||||||||| || ||| ||||
Sbjct 241 TATGCTAAAGCTCATCAATTTACTACTGT-TTTGTCACTCTTCTCTCAAATACTGCGTTC 299
Query 320 TGATACGAGACCTGATAACTTCACCTATGCGTGTTTAGCTCGTGGCTTTTCAGAGAGTTT 379
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGATACAAGACCTGATAACTTCACCTATGCGTGCTTAGCTCGTGGCTTTTCAGAGAGTTT 359
Query 380 CGATACAGAGGGACTGAGACGTGTTCATGGGATTGCAATTATGTCTGGTCTTGGTTTTGA 439
|||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 360 TGATACAAAGGGACTGAGATGTATTCATGGGATTGCAATTGTGTCTGGTCTTGGTTTTGA 419
Query 440 TCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGCCTTATTGTTGAAGC 499
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 420 TCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGACTTATCGTTGAAGC 479
Query 500 AAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTGTGGAATGTTATGATTCT 559
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTTTGGAATGTTATGATTCT 539
Query 560 TGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCAACA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCAACA 599
Query 620 TCGAGGACATCTACCGAATTGTTATACAATGGTAGCGCTAACAATTGGTTTGATTGATCC 679
||||||||| | ||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 600 TCGAGGACACCAACCTAATTGTTATACAATGGTAGCCCTAACAAGTGGTTTGATTGATCC 659
Query 680 TAGTTTGTTACTCATTGCTTGGTCTGTTCATGGATTTTGTTTGAAAATCAATCTAGATTC 739
||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 660 TAGTTTGTTACTCGTTGCTTGGTCTGTTCATGCATTTTGCTTGAAAATCAATTTAGATTC 719
Query 740 TCATTCTTATGTTGGTTGTGCTTTAGTTAACATGTACTCGAGATGC-TGGTGCATAGTTT 798
||||||||||||||||||||||||||| |||||||||||||||||| | |||||| | ||
Sbjct 720 TCATTCTTATGTTGGTTGTGCTTTAGTGAACATGTACTCGAGATGCAT-GTGCATTGCTT 778
Query 799 CTGCTTGTAGTGTGTATAATAGCATCTGTGAGCCTGATTTAGTTGCGTGTTCTTCTTTGA 858
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 779 CTGCTTGTAGTGTGTTTAATAGCATCTCTGAGCCTGATTTAGTTGCGTGTTCTTCTTTGA 838
Query 859 TAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATATGTTTGCTGAGCTGA 918
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 TAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATCTGTTTGCTGAGCTGA 898
Query 919 GAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTATTAGGGTCTTGTGCTG 978
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTATTGGGGTCTTGTGCTG 958
Query 979 AGTTATCGAATTCAGTCTACGGGAAAA-AAGTGCACGGTTATGTTATTCGACTAGGACTA 1037
|||||||| ||||||||| | |||||| |||||||| |||||||||||||||||||||||
Sbjct 959 AGTTATCGGATTCAGTCT-CCGGAAAAGAAGTGCACAGTTATGTTATTCGACTAGGACTA 1017
Query 1038 GAACTTGATATAAAGGTGTGCTCTGGTCTTATAGACATGTACTCAAAATGTGGGCTTCTG 1097
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 GAACTTGATATAAAGGTTTGCTCTGCTCTTATAGACATGTACTCAAAATGTGGGCTTCTA 1077
Query 1098 GATTGCGCGATGAGTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCC 1157
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAATGCGCGATGAGTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCC 1137
Query 1158 CTTATTTTGGGTCTTGGCTTGCACGGTTTTGCTTCCTCTGCGTTTGAAAAGTTCACTGAG 1217
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 CTTATTTTGGGTCTTGGCTTGCACGGTTTTGCTTCCACTGCGTTTGAAAAGTTCACTGAG 1197
Query 1218 ATGCTTGAGATGGGATTGAAACCCGACGAGATCACTTTCTCTGCTCTTCTTTGTACTTGT 1277
|| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATCCTTGAGATGGGATTGATACCGGACGAGATCACTTTCTCTGCTCTTCTTTGTACTTGT 1257
Query 1278 TGCCATTCGGGTCTTTTAGACAAAGGTCAAGATATCTTCGAGAGGATGAAGAGTGAGTTT 1337
|||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1258 TGCCATTCAGGTCTTTTAAACAAAGGTCAAGAGATCTTTGAGAGGATGAAGAGTGAGTTT 1317
Query 1338 GGTATTAAGCCGCAAACAGAGCATTATGTTTACATTGTAAAGCTAATGGGAATGGCTGGA 1397
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1318 GGTATTGAGCCGCAAACAGAGCATTATGTTTACATGGTTAAGCTAATGGGAATGGCAGGA 1377
Query 1398 AAACTGGAAGAAGCATTTGAGTTTGTAATGTCATTACGAAAACCAATTGATTCAGGAATT 1457
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 AAACTAGAAGAAGCATTTGAGTTTGTAATGTCATTACAAAAACCAATTGATTCAGGAATT 1437
Query 1458 TTGGGAGCACTATTGTCATGTTGTGAAGTTCATGAGAACACTCATTTGGCTGAAGTAGTA 1517
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1438 TTGGGAGCACTATTGTCATGTTGCGAAGTTCATGAGAACACTCATTTGGCTGAAGTTGTA 1497
Query 1518 GCAGAGAAAATACAGAAGAGTGGAGAAGAGAGAAGAAGTGTTTACAAAGTGATGCTCTCT 1577
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCAGAGAATATACACAAGAATGGAGAAGAGAGAAGAAGTGTTTACAAAGTGATGCTCTCT 1557
Query 1578 AATGTGTATGCAAGATATGGGAGATGGGATGAAGTAGAAAGGCTTAGAGATGGAATATCA 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AATGTGTATGCAAGATATGGGAGATGGGATGAAGTAGAAAGGCTTAGAGATGGAATATCA 1617
Query 1638 GAAAGCTTTGGAGGGAAATTGCCAGGCATTAGTTGGTTTTAA 1679
||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1618 GAAAGCTATGGAGGGAAATTGCCAGGCATTAGTTGGTTTTAA 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5