BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924508
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64290.1 | Symbols: | F-box protein-related | chr1:23857178... 1170 0.0
AT1G64295.1 | Symbols: | F-box associated ubiquitination effec... 950 0.0
AT2G05360.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 337 2e-91
> AT1G64290.1 | Symbols: | F-box protein-related | chr1:23857178-23858488
REVERSE LENGTH=1311
Length=1311
Score = 1170 bits (633), Expect = 0.0
Identities = 924/1059 (87%), Gaps = 42/1059 (4%)
Strand=Plus/Plus
Query 101 AGCTACGAGTCATGGTTTCTCAATCTCAATCTCCGTAGAACCAATTGTATTTCGGGATAC 160
|||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||
Sbjct 109 AGCTACGAGTCATGGTTTGTCAATCTTAATCTCCTTAGAACCAATCGTATTTCGGGATAC 168
Query 161 TTCCTACAACGCTACGA-AG---AAGGTTAC-AA-----AACAAATTTTTTCCATGAGAG 210
||| |||||| |||| | || |||| || || ||| | |||| ||||||||||
Sbjct 169 TTCATACAACACTAC-ATAGTAAAAGGACACGAACTTCGAACCAGTTTTGTCCATGAGAG 227
Query 211 CAGTGATTTACAAAACAATGGAGTCTCCATCGATTTTCTGCCACACGGAAAGGTCAAGAT 270
|||||||||||||||||||||||||||||||| |||||||||| ||||| | | |||||
Sbjct 228 GAGTGATTTACAAAACAATGGAGTCTCCATCGACTTTCTGCCACCCGGAATGATAAAGAT 287
Query 271 CGAAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTGA-TAATACAGGACTAATAC 329
|||||||||||||||||||||||||||||||||||||||| | | ||||| || || |
Sbjct 288 CGAAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTAAGT-ATACAAAAC-CAT-C 344
Query 330 -CG-GAATACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAA-CACAA 386
|| | ||||||||||| |||||||||||| |||||||||||| |||||||||| | ||
Sbjct 345 ACGTGGATACATAGTCTTCAAACCAACCACTAAACAGTATCAGGTCATACCAAAGC-CAG 403
Query 387 AAGTG--GGGATTTGGGATGTCTCATTCGGTTTAGCGGTAATCGGATTGAACCCTTTCCG 444
||||| ||| ||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 404 AAGTGAAGGG--TTGGGATATGTCATTGGGTTTAGCGGTAATCGGATTGAACCCTTTCCG 461
Query 445 GTATAAAATACTAAGGCTTTCGCAGTCGTCTCGGCGTATGTGTATGTCTCGGGGTGTGTA 504
||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 462 GTATAAAATACAAAGGCTTTCGCA---GTCTCGGCGTATGTGTATGTCTCGGGGTATCTA 518
Query 505 TTATGCGAATCACAGAACTTTTACGTGCGAAGTTTTCGATTCCGATTCGTTTACCTGGAA 564
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 519 CCATTTGAATCACAGAACTTTTATGTGCGAAGTTTTCGATTCTGATTCGTTTACCTGGAA 578
Query 565 GAGATTAGAAAATTTGCGTATACCAAGAACAGACGGTTTAATTCTTTCCCACCCGGTACA 624
||||||||||||||||||| |||||| ||||||| | |||||| ||||| ||||| ||||
Sbjct 579 GAGATTAGAAAATTTGCGTCTACCAAAAACAGACAGATTAATTTTTTCCAACCCGATACA 638
Query 625 AGCTTCGGGGTTGTTCTTGCATTGGAGATCACGGAACAACAATGTGATCCGGTTCTGTCT 684
|| ||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 639 AGTTTC-GGG--GTTCTTGCATTGGATATCACGGAACAACAATGTGATCCGGTTTTGTCT 695
Query 685 CAAAACCGAAACTTGGTCTTTCTTCCATACTCCGAACTTTGGTGTTTTCTCAGGATTAGT 744
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 696 CAAAACCGAAACTTGGTCCTTCTTCCATACTCCGAACTCTGATGTTTTCTCAGGATTAGT 755
Query 745 CAGATACGAAGGGAAGCTAGGTGCTATTTGTCAGTGGACAAACAAAGATCAAGAAAATGT 804
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 756 CAGATACGAAGGGAAGCTAGGTGCTATTCGTCAGTGGACAAACAAAGATCAAGAAGATGT 815
Query 805 TCACG-GATTATGGGTTTTAACGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATA 863
||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 816 TCACGAG-TTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGTTAAAGTGAAAGATA 874
Query 864 TTAAAAGCATTGGAGAAGATTTCATTACGTGGACTCTAGGAAACGACGTCGTGTTGTTTT 923
||||||||||||||| |||||| ||||||||||||| | | |||||||| || ||||||
Sbjct 875 TTAAAAGCATTGGAGTAGATTTGATTACGTGGACTCCAAGCAACGACGTTGTATTGTTTC 934
Query 924 GTAATTGGGATCGTTTTTGCCTCTACAACATAAACACAGAGAAGTTGAAATTAGTTCATA 983
||| | | |||||| ||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 935 GTAGTAGTGATCGTGGTTGCCTCTACAACATAAACGCAGAGAAGTTGAATTTAGTTTATG 994
Query 984 CAAACAA-G-GG---CT--TTGCCTCTTACGTTTGCTTCCCGTTTTGTTCTGATTACGAG 1036
|||| || | || || ||| |||| |||||| || |||||||||||||||||||||
Sbjct 995 CAAAAAAAGAGGGATCTGATTGT-TCTTTCGTTTGTTTTCCGTTTTGTTCTGATTACGAG 1053
Query 1037 AAGGTTGATAGGGACGAAAGAAGAAATGGGCCGACACTTTTAACAAAAAG-AAAAAGAAA 1095
| ||||||| | ||| |||||| || ||||||||||||| || ||||| ||||| |||
Sbjct 1054 AGGGTTGATCTGAACGGAAGAAGCAACGGGCCGACACTTTAAAAAAAAAATAAAAA-AAA 1112
Query 1096 TAGGTCGACAAATGCAAAC-TAGTCAACAAGGCTCTCAA 1133
| || |||||||||||||| |||| |||||| ||||||
Sbjct 1113 TGGGCCGACAAATGCAAACGTAGTTGACAAGGATCTCAA 1151
> AT1G64295.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:23859554-23860624 REVERSE LENGTH=1071
Length=1071
Score = 950 bits (514), Expect = 0.0
Identities = 838/987 (85%), Gaps = 51/987 (5%)
Strand=Plus/Plus
Query 101 AGCTACGAGTCATGGTTTCTCAATCTCAATCTCCGTAGAACCAATTGTATTTCGGGATAC 160
||||||||||| |||||| |||| || ||||||| | ||||||| ||| || ||||||
Sbjct 109 AGCTACGAGTCTTGGTTTGTCAACCTAAATCTCCATCGAACCAACAATATCTCTGGATAC 168
Query 161 TTCCTACAACGCTACG-AAGAAGGTTACAAAAC---A-A--A-TTTTTTCCATGAGAGCA 212
|||||| ||||||||| ||| ||| ||| |||| | | | ||||||||||||||| |
Sbjct 169 TTCCTAGAACGCTACGAAAG-AGGATAC-AAACTTGATACCAGTTTTTTCCATGAGAGGA 226
Query 213 GTGATTTACAAAACAATGGAGTCTCCATCGATTTTCTGCCACACGGAAAGGTCAAGATCG 272
| ||||| | ||||| |||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 227 GAGATTTGGATAACAAAGGAGTCTCCATCGATTTTCTGCCACAAGGAGAGGTAAAGATCA 286
Query 273 AAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGT-TGATAATACAGGACTAATACCG 331
|||||||||||||| |||||||||||||||||||| | | || ||||| ||| |||||||
Sbjct 287 AAGCTTGTGATGCACGTCATGGGATATTGCTTTGT-TATAATGATACAAGACCAATACCG 345
Query 332 GAATACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAACACAAAAGTG 391
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 346 GAATACATAGTCTGCAAACCAACAACAAAACAGTATCAGATCATACCAAACCCAAAAGTG 405
Query 392 GGGATTTGGGATGTCTCATTCGGTTTAGCGGTAATCGGATTGAACCCTTTCCGGTATAAA 451
||| ||| ||| ||||| ||| || |||||| ||||||| | |||||||||||||||
Sbjct 406 AGGAGTTGTGATAAGTCATTAGGTCTAACGGTAACCGGATTGCAGCCTTTCCGGTATAAA 465
Query 452 ATACTAAGGCTTTCGCAGTCGTCTCGGCGTATGTGTATGTCTCGGGGTGTGTATTATGCG 511
||| | ||||||||| | ||| | | || ||||| ||| | | | || |
Sbjct 466 ATATTTAGGCTTTCGAAATCG---C--C---TG-GTATGACTC-----G-G-A--AT-C- 505
Query 512 AATCACAGAACTTTTACGTGCGAAGTTTTCGATTCCGATTCGTTTACCTGGAAGAGATTA 571
| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 506 --T--CAGAACTTTTGCGTGCGAAGTTTTTGATTCCGATTCGTTTATGTGGAAGAGATTA 561
Query 572 GAAAATTTGCGTATACCAAGAACAGACGGTTTAATTCTTTCCCACCCGGTACAAGCTTCG 631
||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 562 AAAAATTTGCGTCTACCGAGAACAGACGGTCTAATTCTTTCAAACCCGGTACAAGCTTC- 620
Query 632 GGGTTGTTCTTGCATTGGAGATCACGGAACAACAATGTGATCCGGTTCTGTCTCAAAACC 691
|| ||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||
Sbjct 621 AGG--GTTCTTGCATTGGAGATCATGGAACCACAATGTGATCCGGTTATGTCCCAAAACC 678
Query 692 GAAACTTGGTCTTTCTTCCATACTCCGAACTTTGGTGTT-TTCTCAGGA-TTAGTCAGAT 749
||||||||||||||||| |||||||| ||| ||||| || ||| || || |||||||| |
Sbjct 679 GAAACTTGGTCTTTCTTACATACTCCAAACGTTGGT-TTATTCCCA-GAGTTAGTCAGCT 736
Query 750 ACGAAGGGAAGCTAGGTGCTATTTGTCAGTGGACAAACAA-AGATCAAGAAAATGTTCAC 808
|||||||||||||||||| |||| |||| |||| |||||| | |||||||| ||||||||
Sbjct 737 ACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAACA-ATCAAGAAGATGTTCAC 795
Query 809 GGATTATGGGTTTTAACGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATATTAAA 868
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 796 AGATTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATATTGAA 855
Query 869 AGCATTGGAGAAGATT-TCATTACGTGGACT-CTAGGAAACGACGTCGTGTTGTTTTGTA 926
|||||||||| ||| | |||||||||| | | | | ||||||||||| || ||| ||
Sbjct 856 AGCATTGGAGTAGAGCAT-ATTACGTGGA-TACCAAGCAACGACGTCGTAATGCTTTCTA 913
Query 927 ATTGGGATCGTTTTTGCCTCTACAACATAAACACAGAGAAGTTGAAA-TTAGTTCATACA 985
|||||||| | |||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct 914 GTTGGGATCATGTTTGCCTCTACAACTTAAACACAGAGAAGTT-AAACTTAGTTCATACA 972
Query 986 AACAAGGGCTTTGCCTCTTACGTTTGCTTCCCGTTTTGTTCTGATTACGAGAAGGTTGAT 1045
||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 973 AACAAGGATTTTGCCTCTTACGTTTGTTTCCCCTTTTGTTCTGATTACGAGAGGGTTGAT 1032
Query 1046 AGGGACGAAAGAAGAAATGGGCCGACA 1072
||||| |||||||||||| ||||||
Sbjct 1033 CTGGACGGAAGAAGAAATGGACCGACA 1059
> AT2G05360.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box associated ubiquitination effector family protein
(TAIR:AT1G64295.1); Has 72 Blast hits to 64 proteins in
7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:1956115-1959303 REVERSE LENGTH=1077
Length=1077
Score = 337 bits (182), Expect = 2e-91
Identities = 297/352 (84%), Gaps = 10/352 (3%)
Strand=Plus/Plus
Query 101 AGCTACGAGTCATGGTTTCTCAATCTCAATCTCCGTAGAACCAATTGTATTTCGGGATAC 160
|||||||||||||||||||||||||||||| || ||||||||| | ||| || ||||||
Sbjct 109 AGCTACGAGTCATGGTTTCTCAATCTCAATTTCTATAGAACCAACTATATCTCCGGATAC 168
Query 161 TTCCTACAACGCTACGAAGAAGG-T-TACAA---A-ACAAATTTTTTCCATGAGAGCAGT 214
|||||| || ||||| ||| ||| | |||| | || | |||| |||||||||| ||
Sbjct 169 TTCCTAGAAAGCTACAAAGGAGGATACACAATTGATACCAGTTTTGTCCATGAGAGGAGA 228
Query 215 GATTTACAAAACAATGGAGTCTCCATCGATTTTCTGCCACACGGAAAG-GTCAAGATCGA 273
||||| ||||||| |||||||||||||||||||||||||| ||| || | |||||| |
Sbjct 229 GATTTGGAAAACAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGAGAG-AAAGATCAA 287
Query 274 AGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTGATAATACAGGACTAATACCGGA 333
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 288 AGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTAATGATACAGGACTAATACCTGA 347
Query 334 ATACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAACACAAAAGTGGG 393
|||||||||||||||||||||||||||||||||||| |||||||||| | ||||| || |
Sbjct 348 ATACATAGTCTGCAAACCAACCACAAAACAGTATCATATCATACCAACCCCAAAATTGTG 407
Query 394 GATTTGGGATGTCTCATTCGGTTTAGCGGTAA-TCGGATTGAACCCTTTCCG 444
| | ||| ||| ||||| || |||||| | |||||| | ||||||||
Sbjct 408 TAGCCGTGATAAGTCACTCGGTATAACGGTAACT-GGATTGGAGCCTTTCCG 458
Score = 187 bits (101), Expect = 2e-46
Identities = 158/185 (85%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 730 TTTCTCAGGA-TTAGTCAGATACGAAGGGAAGCTAGGTGCTATT-TGTCAGTGGACAAAC 787
|||| || || || ||||||||||||||||||||||||| |||| | ||| |||| ||||
Sbjct 459 TTTCCCA-GAGTTGGTCAGATACGAAGGGAAGCTAGGTGTTATTCT-TCACTGGATAAAC 516
Query 788 AAAGATCAAGAAAATGTTCACGGATTATGGGTTTTAACGAGCAGTTTTGAAAAGTCGTGG 847
|||||||||||| |||||||||||||||||||||||| |||||||| || |||| ||| |
Sbjct 517 AAAGATCAAGAAGATGTTCACGGATTATGGGTTTTAAAGAGCAGTTGTGGAAAGGCGT-G 575
Query 848 GA-AAAAGTGAAAGATATTAAAAGCATTGGAGAAGATTTCATTACGTGGACTCTAGGAAA 906
|| |||||||||||||||||||||||||||| || | ||| |||||||| | | ||
Sbjct 576 GATAAAAGTGAAAGATATTAAAAGCATTGGATTAGGTCAGATTGTGTGGACTCCAAGCAA 635
Query 907 CGACG 911
|||||
Sbjct 636 CGACG 640
Score = 110 bits (59), Expect = 4e-23
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 23 ATGAGTTCTCCGGTGATGAATCAAGACATGATCCAAGAGGTTCTTTCTTATATACCGCCT 82
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||
Sbjct 1 ATGAGTTCTCCGGTGATGAATCAAGACATGATCCAAGAAGTTCTTTCTTATCTCCCGGCT 60
Query 83 TCAAAAG-TCGGAAAATTCAG 102
|||||| | |||||||||||
Sbjct 61 TCAAAAAAT-GGAAAATTCAG 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5