BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924514

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33010.1 | Symbols:  | Ubiquitin-associated (UBA) protein | ...   228    4e-59


> AT2G33010.1 | Symbols:  | Ubiquitin-associated (UBA) protein 
| chr2:14010838-14013246 FORWARD LENGTH=2004
Length=2004

 Score =  228 bits (123),  Expect = 4e-59
 Identities = 206/243 (85%), Gaps = 17/243 (7%)
 Strand=Plus/Plus

Query  2    CTCGAGCGCTTTATTTGGGATGTGGAGAGAGCCGGGGACCATTACTGTGACCAGCGATAT  61
            ||||||||||| | |||||| |||||||||||||||| ||| |||| |||  | ||| | 
Sbjct  478  CTCGAGCGCTTCAATTGGGACGTGGAGAGAGCCGGGGCCCAATACTATGAGGATCGAGA-  536

Query  62   TTGCAGCATCGTACTTCATATG--C---CGGAGATTGATCAGTCGTCTTTGCAGGGGTTT  116
             | ||||| |||||||||||||  |   |||||||||||||||||| ||||||| |||||
Sbjct  537  -T-CAGCAGCGTACTTCATATGATCGTACGGAGATTGATCAGTCGTATTTGCAGCGGTTT  594

Query  117  CAAGAGGGTCATATGCCGATGATTGGGGTTTCGAATTTGGAACGATTCTCACAAGATGAA  176
            ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  595  CAAGAGGGTTATACGCCGATGATTGGGGTTTCGAATTTGGAAGGATTCTCACAAAATGAA  654

Query  177  ACATCGACGGCTTTGGTTATGGATTTGATGGACCTTAGTGCTCCGCCTCTTCCATCGTTA  236
            ||||||||   |      |||||||||||| | | |||||||||||||||||||||||||
Sbjct  655  ACATCGAC---T------ATGGATTTGATGCAGCATAGTGCTCCGCCTCTTCCATCGTTA  705

Query  237  CAT  239
            |||
Sbjct  706  CAT  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5