BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924517

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing pr...   732    0.0  


> AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing 
protein | chr1:9963593-9966320 FORWARD LENGTH=2202
Length=2202

 Score =  732 bits (396),  Expect = 0.0
 Identities = 465/497 (94%), Gaps = 9/497 (2%)
 Strand=Plus/Plus

Query  63   GCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCAAGAAAGCCGTCTCAGTG  122
            |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| || 
Sbjct  107  GCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCTGTA  166

Query  123  ATCGGATTAGGTTACTATCTCTGCTCCGATGTTTGTTTCTCCGCTTGTAAAACTACACCA  182
            ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| 
Sbjct  167  ATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACACCC  226

Query  183  GACGGTTCCAGGTTAGTCGAAATCGTCCCGACCCGGAACCGTGACTTAGTCTTCCCCGGT  242
            ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct  227  GACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCCGGT  286

Query  243  GGGATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGA  302
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287  GGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGA  346

Query  303  TTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGT  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  TTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGT  406

Query  363  CTCTCCGGGAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGG  422
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  407  CTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGG  466

Query  423  CCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTAT--TGGTTC----ATTAGCTTGTAT  476
            || ||||||||||||||||| |||| ||||||||||  |||||     ||||| ||||||
Sbjct  467  CCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTGTAT  526

Query  477  ATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAGGTT  536
            |   |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  527  A---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAGGTT  583

Query  537  CCTTCTTCTTGGTACTC  553
            |||||||||||| ||||
Sbjct  584  CCTTCTTCTTGGGACTC  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28834400378


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5