BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924520

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64220.1 | Symbols: TOM7-2 | translocase of outer membrane 7...   268    2e-71


> AT1G64220.1 | Symbols: TOM7-2 | translocase of outer membrane 
7 kDa subunit 2 | chr1:23833088-23833321 REVERSE LENGTH=234
Length=234

 Score =  268 bits (145),  Expect = 2e-71
 Identities = 169/181 (93%), Gaps = 0/181 (0%)
 Strand=Plus/Plus

Query  92   atcatcatcatcTTCTTCCTCCTCTGCATCATCAAAGTACAAGGTCTTCAAGGCTTGGAC  151
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  54   ATCATCATCATCTTCGTCCTCCTCTGCATCATCAAAGTACAAGGTCTTCAAGGATTGGAC  113

Query  152  CAACTGGTCATTGGAGAAAGCCAAAGTCGCGACTCACTATGGCTTCATCCCTCTGATCAT  211
            ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  114  CAACTGGTCATTACAGAAAGCCAAAGTCGCGACTCACTATGGTTTCATCCCTCTGATCAT  173

Query  212  CATCATCGGCATGAATTCCGATCCTAAACCTGATATTTTTCAACTCCTCAGTCCCGTTTA  271
            ||||||||||||||| || |||||||||||| || ||||||| ||||||  |||||||||
Sbjct  174  CATCATCGGCATGAACTCAGATCCTAAACCTCATCTTTTTCACCTCCTCTCTCCCGTTTA  233

Query  272  A  272
            |
Sbjct  234  A  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5