BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924524
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:1... 152 2e-36
> AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:11280151-11281894
FORWARD LENGTH=1133
Length=1133
Score = 152 bits (82), Expect = 2e-36
Identities = 182/228 (80%), Gaps = 16/228 (7%)
Strand=Plus/Plus
Query 27 AGGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTGAGAGAGGAATGGGGAGAAG 86
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 821 AGGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAGAGTGGGGAGAAG 880
Query 87 AAGTGCA-GAACGCAATTAGGACAGCCCTCGAGGA-GCTGAATGACTTCAACCCAAGTGG 144
| ||| | ||||||| | | ||| || ||||| || | | || || || |||||||||||
Sbjct 881 AGGTG-ATGAACGCAGTAAAGACGGCTCTCGAAGAAGTT-AACGAGTTTAACCCAAGTGG 938
Query 145 CCGATACATG--GTTCCGGTAGTGTGGAATTTTGGAA-AAGGGAG-GAAAGCAACACTGA 200
|||| |||| || || | ||||||||| | || |||| || | | || ||| |||
Sbjct 939 CCGA--CATGTAGTCCCAACACTGTGGAATTCCG-AACAAGGAAGAGTA-GCTACATTGA 994
Query 201 AAGAAG-GTATTACTCACATGACGA-AGGAGGTCAAAACTCTCAAACG 246
||||| | ||| |||||||||| | | ||| |||||||||| |||||
Sbjct 995 GAGAAGTG-ATTGCTCACATGAC-ACATGAGATCAAAACTCTTAAACG 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5