BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924529
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64160.1 | Symbols: | Disease resistance-responsive (dirige... 891 0.0
> AT1G64160.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr1:23814010-23814839 FORWARD
LENGTH=830
Length=830
Score = 891 bits (482), Expect = 0.0
Identities = 552/586 (94%), Gaps = 4/586 (1%)
Strand=Plus/Plus
Query 8 ACACAT-TTTT-AATATGGTCGGCCATATGAAATCAATTCTCTTCTTATTCATTTTCCTT 65
|||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 39 ACACATATTTTCAATATGGTAGGCCAAATGAAATCGTTTCTCTTCTTATTCGTTTTCCTT 98
Query 66 GTTCTATCAAAAACCGTCATATCAGCTAGAAAACCATCCAAATCGCAACCAAAACCGTGC 125
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 GTTCTAACAAAAACCGTCATATCAGCTAGAAAACCATCCAAATCGCAACCAAAACCGTGC 158
Query 126 AAAAACTTTGTTCTCTACTACCACGACATAATGTTCGGCGTCGACGACGTCCAAAACGCG 185
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 159 AAAAACTTTGTCCTCTACTACCACGACATAATGTTCGGTGTCGACGACGTGCAAAACGCG 218
Query 186 ACTTCTGCAGCCA-TTACCAACCCGCCGGGCCTCGGGAATTTCAAATTCGGAAAACTCGT 244
||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 219 ACTTCTGCAGC-AGTTACCAACCCACCGGGCCTCGGGAATTTCAAATTCGGGAAACTCGT 277
Query 245 GATCTTCGACGATCCCATGACCATAGACAAAAACTTTCAATCCGAACCTGTAGCACGTGC 304
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||
Sbjct 278 TATCTTCGACGATCCTATGACCATAGACAAAAACTTTCAGTCCGAACCTGTGGCAAGAGC 337
Query 305 TCAAGGATTCTATTTCTACGACATGAAGAACGATTACAATGCATGGTTCGCGTACACACT 364
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 338 TCAAGGGTTCTATTTCTACGACATGAAGAATGACTACAATGCATGGTTCGCGTACACACT 397
Query 365 TGTGTTCAACTCTACTCAACACAAAGGGACGTTGAATATAATGGGAGCAGATCTTATGAT 424
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 398 TGTGTTCAACTCGACTCAACACAAAGGGACGTTGAACATAATGGGAGCAGATCTCATGAT 457
Query 425 GGAGAAGACTAGAGATTTGTCTGTGGTCGGAGGGACAGGCGATTTTTTCATGTCTCGAGG 484
|| | ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 458 GGTGCAGAGTAGAGATTTGTCTGTTGTCGGAGGGACAGGTGATTTTTTCATGTCTCGAGG 517
Query 485 GATTGTTACGTTTGAGACTGATACCTTTGAAGGTGCTAAGTATTTTAGGGTCAAGATGGA 544
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GATTGTTACGTTTGAGACCGATACCTTTGAAGGTGCTAAGTATTTTAGGGTCAAGATGGA 577
Query 545 TATCAAACTCTATGATTGTTACTAAAAGAGACCATTAAATGGTTCC 590
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 578 TATCAAACTCTATGAATGTTACTAAAAGAGACCATTAAATGGTTCC 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28382293055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5