BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924545

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64035.1 | Symbols:  | pseudogene, putative serpin, blastp m...   590    6e-168


> AT1G64035.1 | Symbols:  | pseudogene, putative serpin, blastp 
match of 55% identity and 1.1e-82 P-value to GP|26224736|gb|AAN76362.1||AY158152 
serpin-like protein {Citrus x paradisi} 
| chr1:23755496-23757736 REVERSE LENGTH=2241
Length=2241

 Score =  590 bits (319),  Expect = 6e-168
 Identities = 365/388 (94%), Gaps = 0/388 (0%)
 Strand=Plus/Plus

Query  141   CAAGAAGCGATGAAGAAGCAAAACGACGTTGCTCTGTTCCTTGCAGGGAAAGTAATCTCT  200
             ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct  1019  CAAGAAGCGATGAAGAAGCAAAACGACGTTGCTCTTTTCCTTGCGGGGGAAGTAATCTCT  1078

Query  201   ACCGTAGACAAAAACTCTAACTTCGTCTTCTCTCCTGCATCTATCAACTCCGTTCTCACC  260
              ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1079  GCCGCAGACAAAAACTCTAACGTCGTCTTCTCTCCTGCATCTATCAACTCCGTTCTCACC  1138

Query  261   ATGTTGGCTGCTATCTCCGACAATGAAACACTAAAATCCTGCATCCTCTCCTTTCTTAGG  320
             |||   ||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||
Sbjct  1139  ATGGCCGCTGCTACCTCCGACAGTGAAGCACTAAAATCTTGCATCCTCTCCTTCCTTAGG  1198

Query  321   TCTTCTTCCACCGACGAGCTCAACGACATCTTCCGCGAAATCGCTTCCGTCGTCCTCGTC  380
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1199  TCTTCTTCCACCGACGAGCTCAACGACATCTTCCGCGAAATAGCTTCCGTCGTCCTCGTC  1258

Query  381   GACGGAAGCAAAAGAGGTGGCCCCAAAATCGCAGTGGCTAATGGAGTGTGGAGAGAGCAA  440
             ||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct  1259  GACGGAAGCAAAACAGGTGGCCCCAAAATCACGGTGGTTAATGGAGTGTGGAGAGAGCAA  1318

Query  441   TCACTTCCGTGTAGTCCCGAGTCGAAAGATCTCTTTGAGAATTTCTTCAAGGCTGATTTT  500
             |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| 
Sbjct  1319  TCACTTCCGTGTAGTCCCGAGTCGAAAGATCTCTTTGAGAATTTCTACAAGTCTGCTTTC  1378

Query  501   GCTCAAGTTGATTTCCGATCCAAGGTCA  528
             ||||||||||||||||||||||||||||
Sbjct  1379  GCTCAAGTTGATTTCCGATCCAAGGTCA  1406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5