BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924569
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63830.2 | Symbols: | PLAC8 family protein | chr1:23685319-... 1140 0.0
AT5G41390.1 | Symbols: | PLAC8 family protein | chr5:16565303-... 638 0.0
> AT1G63830.2 | Symbols: | PLAC8 family protein | chr1:23685319-23687322
FORWARD LENGTH=1012
Length=1012
Score = 1140 bits (617), Expect = 0.0
Identities = 700/740 (95%), Gaps = 6/740 (1%)
Strand=Plus/Plus
Query 2 TTTTTGAAGTTTCCAAAGCAATGGCGGGGTCACAAGATAAGCTGGAGAAGATGAAACTCC 61
|||||| |||||||||||||||||||| ||| ||||||||| |||| |||||||||||
Sbjct 71 TTTTTG-AGTTTCCAAAGCAATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTA 129
Query 62 GTCAGGATTACCGGAACTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTC 121
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GGCAAGATTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTC 189
Query 122 CCTATTGCTGCATCTCGTGTCTGTGTGGACCTTGTGTTTCATACATGCTTCGGAGAAGAG 181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 190 CCTATTGCTGCATCTCGTGTCTGTGTGGACCTTGTGTGTCATACATGCTTCGGAGAAGAG 249
Query 182 CACTTTACAATGACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCTTGTAGTGGGA 241
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 250 CACTTTACAATGACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCCTGTAGTGGAA 309
Query 242 GATGTGGAGAAAGCAAATGTCCTCAACTTTGCCTTGCCACCGAGGTTTTTCTTTGCTTCG 301
| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 310 GGTGTGGAGAAAGCAAATGTCCTCAACTTTGCCTTGCCACTGAGGTCTTCCTTTGCTTCG 369
Query 302 GAAACTCCGTGGCCTCTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACAC 361
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GAAACTCTGTGGCCTCTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACAC 429
Query 362 AATGCGACAATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AATGCGACAATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCT 489
Query 422 CTATAGTTGCTTGCATTGTTGGTAGTAATGAACTTTCTGAGGCTTCTCAGATACTCTCTT 481
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 490 CTATAGTTGCTTGCATTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTT 549
Query 482 GCTGTGCTGAAATGGTCTACTGCACGGTTTGTGCATGTATGCAGACACAACACAAGCTTG 541
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 550 GCTGTGCTGATATGGTCTACTGCACGGTCTGCGCATGTATGCAGACACAACACAAACTTG 609
Query 542 AGATGGACAAAAGAGATGGAGTGTTTGGATCTCAACCAATGGGCGTGCCACCAGCTCAGC 601
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 610 AGATGGACAAAAGAGATGGAGTGTTTGGATCGCAGCCAATGGGTGTGCCACCAGCTCAGC 669
Query 602 AGATGTCCCGTTTTGATCAACCTGTCCCTCCTGC--T-GGATACCCTCAGTCCTATCCAC 658
||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 670 AGATGTCTCGTTTTGATCAACCTGTCCCTCCTCCAGTCGGATACCCTCAGTCCTATCCAC 729
Query 659 CGCCTGCTCAAGGCTATCCTCCTGCATCTTACCCGCCTCCTGGTTATCCCCAACATTGAG 718
|||||||||||||||| ||||||||||||||||||||||| |||||||| || |||| ||
Sbjct 730 CGCCTGCTCAAGGCTACCCTCCTGCATCTTACCCGCCTCCCGGTTATCCTCAGCATTAAG 789
Query 719 AA-TCTTAACCGGTATCTTC 737
|| | |||||| ||||||||
Sbjct 790 AAAT-TTAACCAGTATCTTC 808
> AT5G41390.1 | Symbols: | PLAC8 family protein | chr5:16565303-16567483
FORWARD LENGTH=1298
Length=1298
Score = 638 bits (345), Expect = 0.0
Identities = 546/642 (85%), Gaps = 17/642 (3%)
Strand=Plus/Plus
Query 15 CAAAGCAATGGCGGGGTCACAAGATAAGCTGGAGAAGATGAAACTCCGTC-AGGATTACC 73
||||| |||||| | || || |||||||| || |||||| ||||||| | | | |||||
Sbjct 267 CAAAGTTATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAG-TTACC 325
Query 74 GGAACTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTATTGCTGCA 133
|||| |||||||||||||||||||||||||||||| | || || ||||| ||||| | |
Sbjct 326 GGAATTTATGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCT 385
Query 134 TCTCGTGTCTGTGTGGACCTTGTGTTTCATACATGCTTCGG-AGAAGAGCACTTTACAAT 192
|||||||| ||||||||||||| ||||||||| | |||||| || ||||||||||| |||
Sbjct 386 TCTCGTGTTTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAG-AGAGCACTTTATAAT 444
Query 193 GACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCTTGTAGTGG-GAGATGTGGAGA 251
|||||||||||||| ||||| |||| ||| || |||||||||||||| || ||||||||
Sbjct 445 GACATGTCAAGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAG-TGTGGAGA 503
Query 252 AAGCAAATGTCCTCAACTTTGCCTTGCCACCGAGGTTTTTCTTTGCTTCGGAAACTCCGT 311
||||||||| |||||| |||| |||||||||||||| | ||| || ||||| ||||| ||
Sbjct 504 AAGCAAATGCCCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGT 563
Query 312 GGCCTCTACCCGCTTTCT-TCTGCAGGATGAATTCAACATCCAGACAACACAATGCGACA 370
||| ||||| || ||| | | |||| ||||||||||||||||| |||||| |||||||||
Sbjct 564 GGCATCTACTCGTTTTATGT-TGCAAGATGAATTCAACATCCATACAACAAAATGCGACA 622
Query 371 ATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCTCTATAGTTG 430
|||||||||||||||||||||||||||||| |||| | |||||||| |||||| | || |
Sbjct 623 ATTGCATAATTGGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCG 682
Query 431 CTTGCATTGTTGGTAGTAATGAACTTTCTGAGGCTTCTCAGATACTCTCTTGCTGTG-CT 489
||||||||||||| ||| ||||||| ||||| || |||||| | || ||||||| || |
Sbjct 683 CTTGCATTGTTGGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCT-TGGCG 741
Query 490 GAAATGGTCTACTGCACGGTTTGTGCATGTATGCAGACACAACACAAGCTTGAGATGGAC 549
|| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 742 GATATGGTCTATTGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGAC 801
Query 550 AAAAGAGATGGAGTGTTTGGATC-TCAACCAATGGGC-GTGCCACCAGCTCAGCAGATGT 607
||||||||||| || || | || |||||||||| | ||||||||||||||||| ||||
Sbjct 802 AAAAGAGATGGTTTGATTAG-TCCTCAACCAATGT-CAGTGCCACCAGCTCAGCAAATGT 859
Query 608 CCCGTTTTGATCAACCTGTCCCTCC-T--GCTGGATACCCTC 646
| || |||||||||| |||||||| | || || |||||||
Sbjct 860 CTCGCATTGATCAACCGGTCCCTCCCTATGCCGGTTACCCTC 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5