BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924573
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63780.1 | Symbols: IMP4 | Ribosomal RNA processing Brix dom... 1441 0.0
> AT1G63780.1 | Symbols: IMP4 | Ribosomal RNA processing Brix domain
protein | chr1:23664834-23667367 REVERSE LENGTH=1220
Length=1220
Score = 1441 bits (780), Expect = 0.0
Identities = 870/915 (95%), Gaps = 0/915 (0%)
Strand=Plus/Plus
Query 7 CTCACGACGAATCACGATGTTGCGCAGAAACGTAAGGTTAAGAAAAGAGTATCTCTACAG 66
||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||
Sbjct 109 CTCACGACGAATCACGATGCAACGCAGACTCGTAAGGTTAAAAAAAGAGTATATCTACAG 168
Query 67 GAAAAACTTGGAAGGTGACGAGCGTTTGGTCTATGAGAAGAAGCGGAAGATAAGAGAAGC 126
||||| |||||||||||| |||||| |||||||||| |||||||| ||||||||||||
Sbjct 169 GAAAAGCTTGGAAGGTGATGAGCGTAAGGTCTATGAGCAGAAGCGGCTGATAAGAGAAGC 228
Query 127 CCTTCAAGAAGGAAGGCCGATTCCTACTGAGCTCCGAAACGAGGAGGCCAGGCTTCGACA 186
|||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||
Sbjct 229 CCTTCAAGAAGGAAAGCCGATTCCTACTGAGCTCCGAAACGTCGAAGCCAAGCTTCGACA 288
Query 187 AGAAATTGATCTTGAAGACCAAAACACAGCTGTTCCGCGGAGTCATATCGACGATGAATA 246
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 289 AGAAATTGATCTTGAAGACCAAAACACAGCTGTTCCGCGGAGTCATATCGATGATGAATA 348
Query 247 TGCAAATGCTACGGAAGCAGATCCAAAGATTTTGTTGACAACGTCTAGGAATCCAAGTGC 306
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 349 TGCAAATGCTACGGAAGCAGATCCAAAGATTTTGTTGACAACTTCTAGGAATCCAAGTGC 408
Query 307 TCCCCTCATCCGATTCACAAAGGAATTGAAGTTTTTGTTTCCTAACTCTCAGAGAATAAA 366
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 409 TCCGCTCATCCGATTCACTAAGGAATTGAAGTTTGTGTTTCCTAACTCTCAGAGAATAAA 468
Query 367 TCGTGGTGGTCAGGTCATTTCTGAGATCATTGAAACTGCTCGTTCGCATGATTTTACTGA 426
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 469 TCGTGGTAGTCAGGTCATTTCTGAGATCATTGAAACTGCTCGTTCCCATGATTTTACTGA 528
Query 427 TGTTATATTGGTTCATGAGCACCGCGGTGTGCCTGATGGTCTCATTATCTCTCATCTCCC 486
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 529 TGTTATATTGGTTCATGAGCACCGTGGTGTGCCTGATGGTCTCATTATCTCTCATCTCCC 588
Query 487 ATTTGGACCAACTGCATACTTTGGATTACTTAATGTGGTAACAAGACATGATATTTCAGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATTTGGACCAACTGCATACTTTGGATTACTTAATGTGGTAACAAGACATGATATTTCAGA 648
Query 547 CAAGAAAGCCATTGGAAAAATGCCTGAGCAATATCCTCATCTCATTTTTAACAACTTTAC 606
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CAAGAAATCCATTGGAAAAATGCCTGAGCAATATCCTCATCTCATTTTTAACAACTTTAC 708
Query 607 TACTCAGATGGGTCAAAGAGTTGCAAACATCTTAAAACATATCTTCCCTGCTCCAAAACT 666
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 709 TACTCAGATGGGTCAAAGAGTTGGAAACATCTTAAAACATATCTTCCCTGCTCCAAAACT 768
Query 667 GGATGCAAGACGTATAGTTACTTTTGCTAATCAATCTGATTATATTTCATTCAGGAATCA 726
|||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 769 GGATGCAAAACGTATAGTTACTTTTTCTAATCAATCCGATTATATATCATTCAGGAATCA 828
Query 727 TGTCTATGATAAAGGAGAAGGAGGCCCGAAATCGATTGAGCTTAAAGAAATCGGTCCTCG 786
|||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||
Sbjct 829 TGTCTATGATAAAGGAGAGGGAGGTCCAAAATCAATCGAGCTTAAAGAAATCGGTCCTCG 888
Query 787 GTTTGAGTTGCGGCTCTACCAGGTGAAATTAGGAACAGTGGAACAAAATGAAGCAGAGAT 846
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 889 ATTTGAGTTGCGGCTCTACCAGGTGAAATTAGGAACTGTGGAACAAAATGAAGCAGAGAT 948
Query 847 CGAATGGGTTATTAGACCGTACATGAACACCGCTAAAAAACGCCAGTTCATCGGTGAATG 906
|||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct 949 CGAATGGGTTATAAGACCGTACATGAACACCTCTAAAAAGCGCAAGTTCATCGGTGAATG 1008
Query 907 ATGGCTAAACGGAAC 921
||| |||||||||||
Sbjct 1009 ATGACTAAACGGAAC 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5