BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924579

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77720.1 | Symbols: PPK1 | putative protein kinase 1 | chr1:...   121    4e-27


> AT1G77720.1 | Symbols: PPK1 | putative protein kinase 1 | chr1:29210521-29214087 
FORWARD LENGTH=2753
Length=2753

 Score =  121 bits (65),  Expect = 4e-27
 Identities = 71/74 (96%), Gaps = 0/74 (0%)
 Strand=Plus/Plus

Query  1    GATGCAGTTGAGATTTAGCCATGGACAGGAAGGCTAACCTTCCGGTTCAACCGGATAAAC  60
            ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct  190  GATGCAGTTGAGATTTAGCAATGGACAGGGAGGATAACCTTCCGGTTCAACCGGATAAAC  249

Query  61   CTCCGAAGAGTCTG  74
            ||||||||||||||
Sbjct  250  CTCCGAAGAGTCTG  263


 Score =  121 bits (65),  Expect = 4e-27
 Identities = 69/71 (97%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  91   CTCCACAACGACAAGCTTCAAGAAATACACGTTTGGTTACAGCTGAAGGGCAGAGATCTC  150
            |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  418  CTCCACAAAGACAAGCTTCAAGAAATACACGATTGGTTACAGCTGAAGGGCAGAGATCTC  477

Query  151  AGGATGTTGTT  161
            |||||||||||
Sbjct  478  AGGATGTTGTT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11963724262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5