BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924583
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679... 222 4e-57
> AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679887-17685187
REVERSE LENGTH=2697
Length=2697
Score = 222 bits (120), Expect = 4e-57
Identities = 611/834 (73%), Gaps = 90/834 (11%)
Strand=Plus/Plus
Query 15 AAGAGATATGGAGGATCA-GAAGCCGACGAGTTTCACGTTTGAGATAGATAACTTCTCCG 73
||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||| |
Sbjct 69 AAGAGATATGGAGAATCATG-AGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGG 127
Query 74 AGAAGGAATCTGTGATTAGAACAACAA-ACTTCTTAAGCGGCGGCTGCGAATGGTATGTT 132
|||||| | || ||| | | | | | ||| |||||||||| |||||||||| | ||
Sbjct 128 AGAAGGGAGATGCGAT-ATCTC--CTATA-TTCATAAGCGGCGGATGCGAATGGTTTATT 183
Query 133 AAGGTTCATCCCAAAGGAGATCACATTGATGATCACTTGTCTATGTACCTCTG--CGTTG 190
| |||| | || | | ||||| ||||||||| || || || |||| ||||
Sbjct 184 AGGGTT--T------GGC-A--A-ATTGAAGATCACTTGGCTGTG-AC-TCTGAGCGTTC 229
Query 191 CGAATCCTGAATCGTTGCGA-ATTGGATGGAAAAG-ACTAGCT-GCT-TT--TTCCATCG 244
|||||| |||||| || ||| || |||||| |||| | | | | | || ||| || |
Sbjct 230 CGAATCTTGAATCCTTACGATAT-GGATGGGAAAGGAGAACCAAG-TATTCATTC-ATTG 286
Query 245 CTCTACTGAATGAATCGGGCAAAGAGCTCTA-CAGAAAACATGAACCGTTTTACCAATTG 303
| | ||||| |||| |||| ||||||| | | ||| | |||| || | |
Sbjct 287 -TGT--TGAATCAATCAGGCAGAGAGCTCGAAC-GAACATTTGAA--GTAGAAGGTCTC- 339
Query 304 TTCTGCGCTGAGATCCCACTA-A-TGG-GTTGGCCCAAGGCCGTGCCT-CTTGAA-AAGC 358
||||| |||| || | || | ||| || ||||| | ||||| | ||| ||||
Sbjct 340 TTCTGTACTGA-ATT--ATTAGAATGGTGTCATCCCAAAGTAATGCCTAC--GAACAAGC 394
Query 359 TTCAAGAAAAAGGGTT-TTTGGAGAATAATAAATTCATC-TTCAATGTCCAAGTTAAAGT 416
|||||||| | || ||| || ||||||||| | ||| || || |||||||| |||||
Sbjct 395 TTCAAGAA---GT-TTGTTTAGAAAATAATAAACTGATCATTGAA-GTCCAAGTAAAAGT 449
Query 417 AGCTC-AAGTTGTTGATGAAGGATCTGTAAC---TGGGAATGAGATGTT-AGATGTCAAT 471
| || |||||||| |||||||| ||||| || ||| |||||||| | || | |
Sbjct 450 A-CTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGGAGATGTTCA-ATATTGAG 507
Query 472 GGTTTCCAAGTTCTTTATTCTCAGGTGGCTTCAG-TGAGTTGGATTTTCGTGGAACACCC 530
|||||| | ||||| ||| |||||||| || | | | || ||| ||||||||||||| ||
Sbjct 508 GGTTTCGATGTTCTCTATACTCAGGTGTCT-CGGGTCAGCTGGCTTTTCGTGGAACATCC 566
Query 531 TGACGTTGCAGT-GAATTTCA-AACCAAAGAACCAATTACTAAAGACAACGTACATGAAT 588
|| ||||||| || | ||| || ||||||||| || | | ||| | ||||| |||
Sbjct 567 AAACATTGCAGTAGA-TGTCAGAAT-AAAGAACCAGTTGGTGAGGACGGCATACATTAAT 624
Query 589 ATCCTCCTCGGTCTAATCGAGACACT-GAACAAGCCTCTACATAG-CAT-CACCGAGACT 645
| ||||||||||| ||||||||||| || || | ||| || || | | || ||||||
Sbjct 625 GTTCTCCTCGGTCTTATCGAGACACTAGA-CAGGTCTCCACGGAGTCTTTCA--GAGACT 681
Query 646 GAGCTAA-ACAACTCTCAGAGCGACTTGATCGAGCTAACAGAAGCGGGCTTCAAGCTAGA 704
|| || | | | | |||| | ||| |||| ||||||||||||||| || |||||| ||||
Sbjct 682 GACCTTAGAGA-CGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCAAGGTAGA 740
Query 705 CTGGTTGAA-AATAAAGCTTGATGAGGTTTCCTTGGAGAGGAAGA-TAGCAGATGT-TGA 761
||||| || || ||||||||| ||||||||||||| |||||||| | | | || | |||
Sbjct 741 TTGGTTAAAGAA-AAAGCTTGAGGAGGTTTCCTTGGCGAGGAAGAAT-G-ACATTTCTGA 797
Query 762 TGGTTATCGAG-TCCAA-AGCCTGGCAG-AACATATCAAGAATCTCAAAATTGA 812
||||| || || | || | | | | || ||||| |||||||||||||| ||||
Sbjct 798 TGGTTCTC-AGGTGGAAGAAC-TCG-AGGAACATGTCAAGAATCTCAAACTTGA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5