BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924584

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplas...   364    4e-100


> AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast 
signal recognition particle 54 kDa subunit | chr5:1060134-1063319 
REVERSE LENGTH=1888
Length=1888

 Score =  364 bits (197),  Expect = 4e-100
 Identities = 221/233 (95%), Gaps = 0/233 (0%)
 Strand=Plus/Plus

Query  318  ATTTTACATGATGAGCTTGTGAAATTGATGGGTGGAGAAGTATCTGAGCTACAGTTTGCT  377
            ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  519  ATTGTACATGATGAGCTAGTGAAATTGATGGGTGGAGAAGTATCTGAGTTACAGTTTGCT  578

Query  378  AAATCAGGTCCTACGGTAATATTATTGGCTGGACTCCAAGGAGTTGGAAAGACAATGGTT  437
            |||||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct  579  AAATCAGGTCCTACAGTAATATTGTTGGCTGGGCTCCAAGGAGTTGGAAAGACAACGGTT  638

Query  438  TGCGCTAAACTAGCTTGTTACCTAAAGAAGCAGGGAAAATCTTGCATGCTTATTGCTGGA  497
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  639  TGTGCTAAACTAGCTTGTTACCTAAAGAAGCAGGGAAAATCTTGCATGCTTATTGCTGGA  698

Query  498  GATGTGTACCGACCTGCTACCATTGATCAACTTGTCATTTTAGGTGAACAGGT  550
            ||||| |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct  699  GATGTATACCGACCTGCTGCTATCGATCAACTTGTCATTTTAGGTGAACAGGT  751


 Score =  333 bits (180),  Expect = 1e-90
 Identities = 242/270 (90%), Gaps = 12/270 (4%)
 Strand=Plus/Plus

Query  60   AGCTCTGCATTCACCGGT---ACCAGCAATTCAGCTTCTC--T-CTCCTCTAGGAATCCC  113
            |||||||| |||||||||   |||| ||||||||||||||  | |||||||||||||| |
Sbjct  147  AGCTCTGCGTTCACCGGTGGCACCATCAATTCAGCTTCTCTGTCCTCCTCTAGGAATCTC  206

Query  114  TCAACGCGAGAGATATGGAGTTGGGTGAAATCGAAGAC---TGTTGGTCAAGGAAGATAC  170
            || |||||||||||||||||||||||||||||||||||   |||||| || |||||||||
Sbjct  207  TCCACGCGAGAGATATGGAGTTGGGTGAAATCGAAGACTGTTGTTGGCCATGGAAGATAC  266

Query  171  AGAAGAAGCCAAGTGAGAGCCGAGATGTTTGGACAGTTGACTGGTGGACTCGAGGCTGCT  230
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  267  AGAAGAAGCCAAGTGAGAGCCGAGATGTTTGGTCAGTTGACTGGTGGCCTCGAGGCTGCT  326

Query  231  TGGAGCAAACTCAAAGGCGAAGT--T-TTGACCAAGGAGAATATTGCCGAACCAATGCGA  287
            ||||||||||||||||||||||   | ||||| ||||| |||||||| || |||||||| 
Sbjct  327  TGGAGCAAACTCAAAGGCGAAGAGGTCTTGACTAAGGACAATATTGCTGAGCCAATGCGG  386

Query  288  GATATTGGAAGAGCTCTCCTGGAAGCAGAT  317
            |||||  |||||||||||||||||||||||
Sbjct  387  GATATCAGAAGAGCTCTCCTGGAAGCAGAT  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5