BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924585

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069...   289    9e-78


> AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069978 
REVERSE LENGTH=1357
Length=1357

 Score =  289 bits (156),  Expect = 9e-78
 Identities = 187/202 (93%), Gaps = 1/202 (0%)
 Strand=Plus/Plus

Query  17    GTACATGAGTATGACAGAGTCTGCAAGGGAAAAGATGAGATCACTAAGCACACCGAGGCA  76
             |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  1080  GTACATGAGTGTGACAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCACACCAAGGCA  1139

Query  77    ATGTGTAGGGCTCATGGACTCTTTGTTTGATAACTACAACAAGGATGGGGATAAAGTCTC  136
             | |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  1140  ACGTGTAGGGATCATGGATTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGTCTC  1199

Query  137   TCAATGGTCTTCTTTTGTCTGTGAAA-TAGTAAGAACAACAACGCTAAAAAGTCGTCTCT  195
             ||  |||||| |||||||||| |||| |||||||| |||||||||||| |||||||||||
Sbjct  1200  TCTCTGGTCTACTTTTGTCTGCGAAAATAGTAAGATCAACAACGCTAAGAAGTCGTCTCT  1259

Query  196   GACCACATTTCAACATAATTGT  217
             |||||||| |||||||||||||
Sbjct  1260  GACCACATATCAACATAATTGT  1281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9701675557


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5