BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924591
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63660.1 | Symbols: | GMP synthase (glutamine-hydrolyzing),... 2732 0.0
> AT1G63660.1 | Symbols: | GMP synthase (glutamine-hydrolyzing),
putative / glutamine amidotransferase, putative | chr1:23603935-23607219
REVERSE LENGTH=1936
Length=1936
Score = 2732 bits (1479), Expect = 0.0
Identities = 1628/1701 (96%), Gaps = 5/1701 (0%)
Strand=Plus/Plus
Query 1 CCAAGCTCTAAAACCCTATCCATGGAGACGCCGACGATGAAGCCTGATACGGTTTTGATT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCAAGCTCTAAGACCCTATCCATGGAGACGCCGACGATGAAGCCTGATACGGTTTTGATT 178
Query 61 CTTGATTACGGCTCCCAGTACACACATCTCATTACTCGCCGTATTCGTTCTCTCAACGTC 120
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 CTTGATTACGGCTCCCAATACACACATCTCATCACTCGCCGTATTCGTTCTCTCAACGTC 238
Query 121 TTCTCTCTCGTAATCAGTGGAACTTCATCGCTCAAATCAATCACTAGCTATAACCCACGA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCTCTCTCGTTATCAGTGGAACTTCATCGCTCAAATCAATCACTAGCTATAACCCACGA 298
Query 181 GTCGTTATCCTCTCCGGCGGACCTCACTCTGTTCACGCGCTCGACGCGCCGAGTTTTCCC 240
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 299 GTTGTTATCCTCTCCGGTGGTCCTCACTCTGTTCACGCGCTCGACGCGCCGAGTTTCCCC 358
Query 241 GACGGGTTTATGGAGTGGGCAGAGTCGAACGGTG-TTCATGTTTTGGGGATTTGTTATGG 299
|| |||||||| || ||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct 359 GAGGGGTTTATCGAATGGGCAGAGTCGAACGGTGTTTC-TGTTTTGGGGATTTGCTATGG 417
Query 300 TTTGCAATTGATTGTGCAGAAGCTTGGAGGTGTTGTTGTGGAAGGAGAGAGTAAAGAGTA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 418 TTTGCAATTGATTGTGCAGAAGCTTGGTGGTGTTGTTGTGGAAGGAGAGAGCAAAGAGTA 477
Query 360 TGGGAAGATGGAGATTGAAGTGAAGGGCAAATCGGAGATTTTTGGGTCGGAGAGTGGTGG 419
|||||| ||||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 478 TGGGAAAATGGAGATTGAAGTGAAAGGTAAATCTGAGATTTTTGGGTCAGAGAGTGGTGG 537
Query 420 AGAGAAGCAAATGGTTTGGATGAGTCATGGTGATGAAGCGGTTAAGCTTCCTGAAGGGTT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 TGAGAAGCAAATGGTTTGGATGAGTCATGGTGATGAAGCGGTTAAGCTTCCTGAAGGATT 597
Query 480 TGAAGTTGTGGCTCAGAGTGCTCAAGGAGCTGTTGCTGCTTTGGAGAATCGGAAGAAGAA 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 TGAAGTTGTGGCTCAGAGTGCTCAAGGAGCTGTTGCTGCTTTGGAGAGTCGGAAGAAGAA 657
Query 540 GATTTATGGATTGCAGTATCATCCTGAGGTAACTCATTCACCAAAAGGGATGGAGACACT 599
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 658 GATTTATGGATTGCAGTATCATCCTGAGGTGACACATTCACCAAAAGGAATGGAGACACT 717
Query 600 TCGGCACTTCCTCTTTGATGTATGTGGAGTATCTGCCGATTGGAAAATGGAGGATCTGAT 659
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 718 TCGGCATTTCCTCTTTGATGTGTGTGGAGTATCTGCGGATTGGAAAATGGAAGATCTGAT 777
Query 660 GGAAGAAGAGATCAAAGTGATTAACCAAACCGTTGCATCTGACGAACATGTCATTTGCGC 719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 GGAAGAAGAGATCAAAGTGATTAACAAAACCGTTGCATCTGACGAACATGTCATTTGCGC 837
Query 720 CTTGTCAGGAGGTGTGGACTCTACTGTTGCTGCAACTCTTGTTCACAAGGCAATTGGAGA 779
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 CTTGTCAGGAGGTGTAGACTCTACTGTTGCCGCAACTCTTGTTCACAAGGCAATTGGAGA 897
Query 780 TAGGCTTCATTGTATATTTGTTGATAACGGGCTATTAAGGTATAAGGAGCAAGAACGTGT 839
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TAGGCTTCATTGCATCTTTGTTGATAACGGGCTATTAAGGTATAAGGAGCAAGAACGTGT 957
Query 840 GATGGATACCTTTGAGAGAGACTTGCATCTACCTGTTACTTGTGTAGACGCATCTGAGCG 899
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 958 GATGGATACCTTTGAGAGAGACTTGCATCTACCTGTTACTTGTGTTGATGCATCCGAGCG 1017
Query 900 GTTTTTGAGTGAACTTAAAGGCGTTGTGGATCCCGAGACAAAGAGAAAGATAATCGGCAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 GTTTTTGAGTGAACTTAAAGGCGTTGTGGATCCCGAGACAAAGAGAAAGATAATCGGGAG 1077
Query 960 GGAGTTCATCAACATTTTTGATCAATTTGCCCAAGAGTTAGAGAAAAAGCATGGGAAGAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGAGTTCATCAACATTTTTGATCAATTTGCCCAAGAGTTAGAGAAAAAGCATGGGAAGAA 1137
Query 1020 ACCTGCTTTTCTAGTTCAAGGGACTCTGTACCCTGATGTGATTGAGTCGTGCCCTCCCCC 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACCCGCTTTTCTAGTTCAAGGGACTCTGTACCCTGATGTGATTGAGTCGTGCCCTCCCCC 1197
Query 1080 TGGTACTGATAGAACTCATTCTCACACCATCAAAAGTCATCATAACGTTGGAGGACTCCC 1139
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1198 GGGTACTGATAGGACTCATTCTCACACCATCAAAAGTCACCATAATGTTGGAGGACTCCC 1257
Query 1140 TAAAGACATGAAATTGAAGCTGATCGAACCACTCAAGCTTCTCTTCAAAGACGAGGTTCG 1199
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1258 TAAAGACATGAAATTGAAGCTCATCGAACCCCTCAAGCTTCTCTTCAAAGATGAGGTTCG 1317
Query 1200 TGAGCTCGGAAGAATCTTGAATGTTCCCGTAGGATTCTTGAAGCGTCACCCATTCCCCGG 1259
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1318 TGAGCTCGGAAGAATCTTGAATGTGCCGGTAGGGTTCTTGAAGCGTCACCCATTCCCCGG 1377
Query 1260 TCCGGGATTGGCAGTTAGAGTCTTGGGCGATGTCACCCAAGGAAACGCCCTCGAGGTTCT 1319
||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 TCCAGGACTCGCAGTTAGAGTCTTGGGCGATGTCACCCAAGGAAACGCCCTTGAGGTTCT 1437
Query 1320 TCGTCAGGTTGATGAGATTTTCATCCAATCAATCAGAGATGCGGGTCTCTATGATTCGAT 1379
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1438 TCGTCAGGTTGATGAGATATTCATTCAATCAATCAGAGATGCGGGTCTCTATGATTCGAT 1497
Query 1380 CTGGCAAGCTTTCGCAGTGTTCTTGCCTGTAAGATCAGTTGGAGTCCAAGGTGACAAGAG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTGGCAAGCTTTCGCAGTGTTCTTGCCTGTAAGATCAGTTGGAGTCCAAGGTGACAAGAG 1557
Query 1440 AACACATTGTCATGTGGTTGCTCTTCGCGCAGTTACAAGCCAAGATGGAATGACTGCAGA 1499
|||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1558 AACACATTCTCATGTTGTTGCTCTTCGTGCAGTTACAAGCCAAGATGGAATGACCGCAGA 1617
Query 1500 CTGGTTCAATTTTGAGCACAAGTTTTTGGATGATGTTTCCCGGAAAATCTGTAACAGCGT 1559
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1618 TTGGTTCAATTTTGAGCACAAGTTTCTGGACGATGTTTCCCGGAAAATCTGTAACAGCGT 1677
Query 1560 TCAAGGAGTAAACCGTGTGGTTCAAGACATTACATCAAAGCCTCCTTCAACGATTGAATG 1619
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1678 TCAAGGAGTAAACCGTGTGGTTCTAGACATTACATCAAAGCCTCCTTCAACCATCGAATG 1737
Query 1620 GGAATAAAGTAAAAACATAAATTTGAGTCTTTTATTTATGGGTGTCTGCAATTCTTCTAC 1679
||||||||| |||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1738 GGAATAAAG-AAAA-CATATACT-GAGTCTTTTATTTATGGGTGTCTGCAATTCTTCTAC 1794
Query 1680 CATGTAAAATAGATTATCATC 1700
|||||||||||||||||||||
Sbjct 1795 CATGTAAAATAGATTATCATC 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5