BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924602

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63535.1 | Symbols:  | Defensin-like (DEFL) family protein |...   274    2e-73
  AT1G63522.1 | Symbols:  | Defensin-like (DEFL) family protein |...   235    1e-61


> AT1G63535.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:23566045-23566227 REVERSE LENGTH=183
Length=183

 Score =  274 bits (148),  Expect = 2e-73
 Identities = 162/169 (96%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  8    TATAGGTGTGGTGATGAGTGCTAGGATGCAAGAAAGCAAAAACGGTATATTATTGAAGCC  67
            ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct  15   TATAGGTGTGGTGATGAGTGCAAGGATGCAAGAAAGCAAAAAGGGTATATTATTGAAGCC  74

Query  68   TATGACATGCAATACCAATGCAGATTGTGCTAAGTTTTGCAAAGGTCCAATCCACAACTG  127
             | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  75   AAAGACATGCAATACCAATGCAGATTGTGCTAAGTTTTGCAAAGGTCCAATCCAGAACTG  134

Query  128  CCTATATCATACTTGTGCCTGTGTACCGGGAAATCCTCATTGTTGCTAG  176
            ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  135  CCTATATCATACTTGTGCCTGCGTGCCGGGAAATCCTCATTGTTGCTAG  183


> AT1G63522.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:23562205-23562482 REVERSE LENGTH=278
Length=278

 Score =  235 bits (127),  Expect = 1e-61
 Identities = 162/178 (91%), Gaps = 5/178 (3%)
 Strand=Plus/Plus

Query  6    TATATAGGTGTGGTGATGAGTGCTAGGATGCAAGAAAGCAAAAACGGTATATTATTGAAG  65
            ||||||||||||||||||||||| ||||| |||||||||| |||| | ||| ||||||||
Sbjct  25   TATATAGGTGTGGTGATGAGTGCAAGGATACAAGAAAGCACAAAC-G-ATA-TATTGAAG  81

Query  66   CCTATGACATGCAATACCAATGCAGATTGTGCTAAGTTTTGCAAAGGTCCAATCCACAAC  125
            ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  82   CCTATAACATGCAATACCAATGCAGATTGTGCCAAGTTTTGCAAAGGTCCAATCCACAAC  141

Query  126  TGCCTATATCATACTTGTGCC-TGTGTACCGGGAAATCCTCATTGTTGCTAGAAACAC  182
            ||  | |||||||||||| |  || ||||| |||||||||||||||||||||||||||
Sbjct  142  TGTGTCTATCATACTTGT-CAATGCGTACCCGGAAATCCTCATTGTTGCTAGAAACAC  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8702133723


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5