BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924606
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63500.1 | Symbols: | Protein kinase protein with tetratric... 2536 0.0
AT5G41260.1 | Symbols: | Protein kinase protein with tetratric... 1637 0.0
> AT1G63500.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr1:23555686-23558899 FORWARD LENGTH=2289
Length=2289
Score = 2536 bits (1373), Expect = 0.0
Identities = 1456/1497 (97%), Gaps = 1/1497 (0%)
Strand=Plus/Plus
Query 8 AACAAATACTGAAATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGA 67
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AAC-AATACTGAAATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGA 376
Query 68 ACCTGAAGGATCCAATCATGGAGTCACAGGATTAGATGAAGATAGGAGAGGTGAAGGGAA 127
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 377 TCCTGAAGGATCTAATCATGGTGTCACAGGGTTAGATGAAGATAGGAGAGGTGAAGGGAA 436
Query 128 TGATTTGCCTCAATTTCGTGAATTCTCAATTGAGACGTTAAGGAACGCAACATCAGGATT 187
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 437 TGATTTGCCTCAGTTTCGTGAATTCTCAATTGAGACGTTGAGGAACGCAACATCAGGATT 496
Query 188 TGCTACAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TGCTACAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGG 556
Query 248 GAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGA 616
Query 308 TTCTCGTCAGTTTCTGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TTCTCGTCAGTTTCTGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGC 676
Query 368 AAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCC 736
Query 428 TAATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCAAT 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 737 TAATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCGAT 796
Query 488 GCGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GCGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACG 856
Query 548 TGCGCTCTACCATGATTTAAATGCTTATAGAGTTCTCTTTGATGATGACTCAAATCCAAG 607
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TGCACTCTACCATGACTTAAATGCTTATAGAGTTCTCTTTGATGATGACTCAAATCCAAG 916
Query 608 GCTTTCGTGCTTTGGTCTGATGAAAAATAGTAGAGATGGAAAGAGTTATAGTACCAACCT 667
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 917 ACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGACGGAAAGAGTTATAGCACCAACCT 976
Query 668 GGCGTTCACTCCTCCCGAGTATCTCAGAACAGGTCGCGTGACACCAGAAAGCGTGATGTA 727
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 977 GGCGTTCACTCCTCCAGAGTATCTCAGAACAGGTCGTGTGACACCAGAAAGTGTGATGTA 1036
Query 728 CAGTTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACATATTCCTCCAAGCCATGC 787
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1037 CAGTTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACACATTCCTCCAAGTCATGC 1096
Query 788 TCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGTCA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGTCA 1156
Query 848 ATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTATGA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTATGA 1216
Query 908 GCCCCGAGAGCGGCCTAACCCAAAGTCTCTAGTTACTGCAATGATTCCTCTACAGAAGGA 967
|||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 1217 GCCCCGGGAGCGGCCTAACCCGAAGTCTTTAGTTACTGCAATGATCCCTCTACAGAAGGA 1276
Query 968 TCTTGAGACTCCTTCTCATCAACTGATGGGCATACCAAGCAGCGCTTCAACGACACCCCT 1027
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1277 TCTTGAGACTCCTTCTCATCAACTGATGGGCATACCAAGCAGCGCCTCAACGACACCCCT 1336
Query 1028 TTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTCTTGA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTCTTGA 1396
Query 1088 AAAGCTTAGCTATAAAGATGATGAGGGTGCAGCCACAGAGCTTTCGTTCCAGATGTGGAC 1147
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1397 AAAGCTTAGCTATAAAGATGACGAGGGTGCAGCAACAGAGCTTTCGTTCCAGATGTGGAC 1456
Query 1148 CAATCAGATGCAGGACTCGCTGAACTTCAAGAAAAAGGGTGATGTTGCTTTCCGACATAA 1207
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1457 CAATCAGATGCAGGACTCGCTGAACTTCAAGAAGAAGGGTGATGTTGCTTTCCGACATAA 1516
Query 1208 AGAATTTGCAAATGCCATTGACTGCTATTCTCAGTTCATTGAGGGCGGGACAATGGTTTC 1267
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1517 AGAATTTGCAAATGCCATCGACTGCTATTCTCAGTTCATTGAGGGTGGGACAATGGTTTC 1576
Query 1268 CCCTACTGTTTATGCAAGAAGAAGTCTGTGTTACCTGATGAATGAGATGCCCCAAGAGGC 1327
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1577 CCCGACTGTTTATGCAAGAAGAAGTCTGTGTTACCTAATGAATGAGATGCCCCAAGAGGC 1636
Query 1328 GCTGAATGATGCAATGCAAGCCCAAGTTATATCTCCTGCTTGGCATATCGCATCCTATCT 1387
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 1637 GCTGAATGATGCAATGCAAGCCCAAGTGATATCTCCGGCTTGGCATATCGCATCGTATCT 1696
Query 1388 TCAAGCTGTAGCTCTATCAGCCCTAGGCCAAGAGAACGAAGCACACGCTGCTCTTAAAGA 1447
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1697 TCAAGCTGTAGCTCTATCAGCTCTAGGACAAGAGAACGAAGCACACGCTGCTCTTAAAGA 1756
Query 1448 CGGATCAATGCTCGAAAGCAAAAGAAATAGGCTATGATGATGATAGCAGAAAGCACG 1504
|||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 1757 CGGATCAATGCTTGAAAGCAAAAGAAACAGGCTATGATGATGATACCAGAAAACACG 1813
> AT5G41260.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr5:16503774-16507475 FORWARD LENGTH=2192
Length=2192
Score = 1637 bits (886), Expect = 0.0
Identities = 1285/1476 (87%), Gaps = 34/1476 (2%)
Strand=Plus/Plus
Query 16 CTGAAATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGAACCT-GAA 74
||| |||||||||||||||||||||||||| |||| ||||||||||||| || || |||
Sbjct 219 CTGTAATGGGTTGTGAGGTTTCAAAGTTATCTGCACTTTGTTGTGTTTCAGAGTCTGGAA 278
Query 75 GGATCCAATCATGGA-GTCACAGGATTAGATGAAGATA-GGAGAGGTGAAGGGAATGATT 132
|||| |||| | || || ||||| |||||||| || | ||||||||||| ||||||||
Sbjct 279 -GATCGAATCCT-GATGTTACAGGCTTAGATGAGGA-AGGGAGAGGTGAATCGAATGATT 335
Query 133 TGCCTCAATTTCGTGAATTCTCAATTGAGACGT-TAAGGAACGCAACATCAGGATTTGCT 191
|||||||||||||||| ||||| || ||||| | ||||||||||||| |||||||||||
Sbjct 336 TGCCTCAATTTCGTGAGTTCTCTATAGAGAC-TATAAGGAACGCAACTTCAGGATTTGC- 393
Query 192 A-CAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGGGAA 250
| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||| ||
Sbjct 394 AGCAGAGAATATAGTTTCAGAGCATGGTGAGAGAGCTCCTAATGTTGTCTATAAAGGCAA 453
Query 251 -ATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGATT 309
|| || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 454 GCTT-GAGAATCAAAGACGTATTGCTGTCAAAAGGTTTAACCGGAAATCTTGGCCTGATT 512
Query 310 CTCGTCAGTTTC-TGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGCA 368
||||||| ||| |||| ||||| |||||||||||||||||| ||||| |||| ||||||
Sbjct 513 CTCGTCA-ATTCTTGGAAGAAGCCAAAGCTGTTGGTCAATTACGGAATCATAGGATGGCA 571
Query 369 AATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCT 428
||||| ||||| ||||||||||||| |||||||||||| ||| |||| ||||||||||||
Sbjct 572 AATCTACTTGGGTGTTGTTATGAAGATGAAGAGAGACTACTTATTGCAGAGTTTATGCCT 631
Query 429 AATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCAATG 488
|||||||||||||| || ||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 632 AATGAAACTTTGGCAAAACATCTTTTCCACTGGGAGTCACAGCCAATGAAGTGGGCGATG 691
Query 489 CGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGT 548
||||| ||||||||||| ||||||||||| || |||| |||||||| |||||||||||
Sbjct 692 CGACTGAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGT 751
Query 549 GCGCTCTACCATGATTTAAATGCTTATAGAGTTCTCTTTGATGATGACT-CAAATCCAAG 607
|| || |||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 752 GCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATGA-TGCAAATCCAAG 810
Query 608 GCTTTCGTGCTTTGGTCTGATGAAAAATAGTAGAGATGGAAAGAGTTATAGTACCAACCT 667
||||| ||||||||| |||||||||| ||||||||||||||||||||||| || |||||
Sbjct 811 ACTTTCATGCTTTGGTTTGATGAAAAACAGTAGAGATGGAAAGAGTTATAGCACTAACCT 870
Query 668 GGCGTTCACTCCTCCCGAGTATCTCAGAACAGGTCGCGTGACACCAGAAAGCGTGATGTA 727
||| |||||||||||||||||||| || ||||||||||||||||| ||||| || || ||
Sbjct 871 GGCATTCACTCCTCCCGAGTATCTGAGGACAGGTCGCGTGACACCTGAAAGTGTAATATA 930
Query 728 CAG-TTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACATATTCCTCCAAGCCATG 786
||| || ||||||||| || ||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 931 CAGCTT-TGGAACTCTATTACTTGACCTTCTGAGTGGAAAGCATATACCTCCAAGCCATG 989
Query 787 C-TCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGT 845
| | |||||||||||||||||||||||||||| ||| |||| || ||| | ||||| |||
Sbjct 990 CGT-TGGACCTCATACGGGACAGGAACATTCAGATGCTGATGGATTCAGGTTTGGAAGGT 1048
Query 846 CAATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTAT 905
|||||||| || ||||| || |||||| ||||| |||||||||| ||||||||||| |||
Sbjct 1049 CAATTTTCGAGTGACGATGGAACTGAATTAATAAGGTTAGCTTCAAGATGCTTGCAATAT 1108
Query 906 GAGCCCCGAGAGCGGCCTAACCCAAAGTCTCTAGT-TACTGCAATGATTCCTCTACAGAA 964
|| ||||||||||||||||||||||| ||| |||| | |||||||||||||||| |||||
Sbjct 1109 GAACCCCGAGAGCGGCCTAACCCAAAATCTTTAGTCT-CTGCAATGATTCCTCTTCAGAA 1167
Query 965 GGATCTTGAGACTCCTTCTCATCAACTGATGGGCATACC-AAGCAGCGCTTCAACGACAC 1023
|||||||||| | ||||||||||| || ||||| |||| || ||| || ||||||||
Sbjct 1168 AGATCTTGAGATTGCTTCTCATCAATTGTTGGGCGTACCTAA-CAGTGCCACAACGACAG 1226
Query 1024 CCCTTTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTC 1083
| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1227 CTCTTTCACCTCTTGGCGAAGCATGCCTAAGATCAGATCTAACTGCCATACATGAGAT-C 1285
Query 1084 -TTGAAAAGCTTAGCTATAAAGATGATGAGGGTGCAGCCACAGAGCTTTCGTTCCAGATG 1142
|||| |||||| | ||||| ||||| ||||||||| ||||||||||||| |||||||||
Sbjct 1286 ATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAGCTTTCTTTCCAGATG 1345
Query 1143 TGGACCAATCAGATGCAGGACTCGCTGAACTTCAAGAAAAAGGGTGATGT-TGCTTTCCG 1201
|||||| | |||||||||||| | || ||||||||||||||| ||| | ||| |||||
Sbjct 1346 TGGACCGACCAGATGCAGGACACATTGGTCTTCAAGAAAAAGGGGGAT-TCTGCATTCCG 1404
Query 1202 ACATAAAGAATTTGCAAATGCCATTGACTGCTATTCTCAGTTCATTGAGGGCGGGACAAT 1261
||||||||| |||||||| ||||| || ||||||||||||||||| |||| || |||||
Sbjct 1405 ACATAAAGACTTTGCAAAGGCCATCGAATGCTATTCTCAGTTCATCGAGGTAGGTACAAT 1464
Query 1262 GGTTTCCCCTACTGTTTATGCAAGA-AGAAGTCTGTGTTACCTGATGAATGAGATGCCCC 1320
|| |||||| |||||| |||||||| ||| ||||||||||||| |||||||| |||||
Sbjct 1465 GGGTTCCCCAACTGTTCATGCAAGACAGA-GTCTGTGTTACCTAATGAATGATATGCCT- 1522
Query 1321 A-AGAGGCGCTGAATGATGCAATGCAAGCCCAAGTTATATCTCCTGCTTGGCATATCGCA 1379
| ||| || || || ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1523 AGAGAAGCACTAAACAATGCAATGCAAGCACAAGTCATATCTCCTGCTTGGCATATCGCA 1582
Query 1380 TCCTATCTTCAAGCTGTAGCTCTATCAGCCCTAGGCCAAGAGAACGAAGCACACGCTGCT 1439
|| ||||| |||||||||||| | ||||| ||||| |||||||||||||||||| |||||
Sbjct 1583 TCGTATCTCCAAGCTGTAGCTTTGTCAGCTCTAGGACAAGAGAACGAAGCACACACTGCT 1642
Query 1440 CTTAAAGACGGAT-CAATGCTCGAAAGCAAAAGAAA 1474
|| |||||||| | ||||||| ||||||||||||||
Sbjct 1643 CTAAAAGACGG-TGCAATGCTTGAAAGCAAAAGAAA 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5