BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924611
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63450.1 | Symbols: RHS8 | root hair specific 8 | chr1:23531... 1676 0.0
> AT1G63450.1 | Symbols: RHS8 | root hair specific 8 | chr1:23531409-23534569
FORWARD LENGTH=3161
Length=3161
Score = 1676 bits (907), Expect = 0.0
Identities = 1235/1392 (89%), Gaps = 28/1392 (2%)
Strand=Plus/Plus
Query 1 AAAAAGCAACCAAACaaaaaaaTGCCTGTCTCCATCTCAAA---GAGGCGACCAAGAACA 57
||||| ||||||||||| ||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1163 AAAAAACAACCAAACAAGAAAATGCCTGTCTCCGTCTCAAAGTTGAGACGACCAAGAACG 1222
Query 58 TCCaaaaaaaCCGAAACCGAGAAAT-CCGAGAAAACACTTCAAGATTCTCGTACTTGTTG 116
|||||||| |||||||||| ||||| |||| ||||||||| ||||| |||||||||| ||
Sbjct 1223 TCCAAAAAGACCGAAACCG-GAAATCCCGAAAAAACACTTAAAGATCCTCGTACTTGCTG 1281
Query 117 TAATAACATTTGCTCGATC--TT-CTCCAGATCAATTCTCTATCGTGTACCTCTCACGAT 173
||||||| ||| |||||| || | |||||||| |||| ||||||||||||||||||||
Sbjct 1282 TAATAACCTTTTTTCGATCTTTTCCGCCAGATCATTTCTTTATCGTGTACCTCTCACGAT 1341
Query 174 TATCTTTCTCTTCTTAATTTATCTTTGGTCCACTTCCACGACCGCTATCTCCGGTCATGT 233
| ||||||| ||||| |||||||||||||||||||||||||||| |||||| ||| | ||
Sbjct 1342 TCTCTTTCTTTTCTTGATTTATCTTTGGTCCACTTCCACGACCGTTATCTCTGGTAACGT 1401
Query 234 CGTTCATATATGCATCTCTTCGCGGAAGCTCAATGACCGTTATTGTCTCACTGCCGGTAC 293
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| |
Sbjct 1402 CGTTCATATATGCATCTCTTCGCGGAAGCTCACTGACCTTTATTGCCTCACTGCCGGTTC 1461
Query 294 TCAGCCCGCTTTACGTGTACCAGTCAACAATTTCACTAAACCGGTTAGTGAAGATGTTGT 353
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||
Sbjct 1462 TCAGCCCGCTTTACGTGCACCAGTCAACAATTTCACTGCGCCGGCTAGTGAAGATGTGGT 1521
Query 354 AAGAAGGAAAGAAGAGAAGAATGTTGTAGTTCTTGGTAAAGATGGAGACAAGGGTTTCGC 413
|| ||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 1522 AACAAGTAAAGAAGAGAAGAATGTTTTTGTTCTTGGTAAAGACGGAGACAAGGGTTTCGC 1581
Query 414 AAAAAATGAAACATTCGTCGGA-GAAAGAGATTCAGACAAATCTACGGTCGGA-ACAAGC 471
| |||||||||| |||| ||| |||| ||||||||||||||||||||||||| | || |
Sbjct 1582 AGAAAATGAAACCTTCGAGGGAGGAAA-AGATTCAGACAAATCTACGGTCGGAGA-AAAC 1639
Query 472 CTCAACGTC-ATAAAGAATGACACTTCCACCGGAGAAATCTTCAGAGAAAGAGTTTTCGT 530
|||| | || || ||||| || |||| ||| ||||||| || | |||||||||||| | |
Sbjct 1640 CTCACCATCAAT-AAGAACGAAACTTTCACAGGAGAAACCTCCGGAGAAAGAGTTTCCAT 1698
Query 531 TCTTGATCAAGATTCTAAACCCATCCATGAGGAGAATCTTGATTCCGTTCTTGATCAAGA 590
|||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1699 TCTTAATCAAGATGCTAAACCCATCCATGAAAAGAATCTTGATTCCGTTCTTGATCAAGA 1758
Query 591 TTC-TAACCCCAAAAACGAGATTGATCGCGATGTCTTTGTTGATTGGGATCCAGAAACCG 649
||| | | ||||||||||||||||||| ||| || | ||||||||||||||||||| |
Sbjct 1759 TTCTTTA-CCCAAAAACGAGATTGATCAAGATTTCATCATTGATTGGGATCCAGAAACTG 1817
Query 650 GCGAAGAACGATACCGATATTTCAAATCGAAGGA-CGAAAG-CGAGGAGACTGCTCTAAA 707
|||||||||||||||||||||||||| |||| || || ||| ||||||||| | ||||||
Sbjct 1818 GCGAAGAACGATACCGATATTTCAAAGCGAA-GACCG-AAGACGAGGAGACCGGTCTAAA 1875
Query 708 AGCCGTGGACA-AGTATCTTCAAATACAAAGATCTTGGTTATCAATGGGAAGCAACCGCG 766
| | ||| | ||||| |||||||||| ||| |||||||||| ||||||| |||||||
Sbjct 1876 ATCTACGGA-AGAGTATATTCAAATACAGAGAACTTGGTTATCGATGGGAAACAACCGCA 1934
Query 767 GAAAGCCTGGATCTTGCGAAGGAAAAGAG-GTTTACGTTTACGATTTACCATCTAAATTC 825
|||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 1935 AAAAGCCGGGATCTTGCGAAGGAAAAG-GTGTATACGTTTACGATTTACCATCTAAATTC 1993
Query 826 AACAAAGATTTGTTG-GGGCAGTGCTCCGATATGGTCCCATGGGCCAATTTTTGCAGCTA 884
||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||| |||
Sbjct 1994 AACAAAGATTTGTTGAGGGAA-TGCTCCGATATGGTTCCATGGGCTGATTTTTGCAACTA 2052
Query 885 CTTCAAGAACGATGCATTTGGTGATTTGATTGAGAATCTCGGTATAGGCTGGTTCAGAAC 944
||||||||||||||| |||||||| |||| |||| | | |||| |||||||||||||||
Sbjct 2053 CTTCAAGAACGATGCGTTTGGTGAACTGATGGAGAGTATGGGTAAAGGCTGGTTCAGAAC 2112
Query 945 GCATCAATACGCTCTTGAGCCAATCTTTCACTCTAGAGTTTTGAAGCATCCATGTAGGGT 1004
|||||| || | |||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 2113 GCATCAGTATTCACTTGAGCCGATATTTCACTCTAGAATTTTGAAGCATCCATGTAGGGT 2172
Query 1005 TCATGATGAGACCCAAGCAAAGCTCTTCTATGTGCCTTTCTATGGTGGTATAGATGTTTT 1064
|||| | ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2173 TCATAACGAGACTCAAGCGAAGCTCTTCTATGTGCCTTTCTATGGCGGTATGGATGTTTT 2232
Query 1065 GAGATGGCATTTCAAGAACGTTTCTGAG-GATGTGAAGGATGTTTTGGCGATCGAGGTTG 1123
|||||||||||||||||||||||| || |||||||| ||||||||| |||| ||| |||
Sbjct 2233 GAGATGGCATTTCAAGAACGTTTCA-AGCGATGTGAAAGATGTTTTGCCGATTGAGATTG 2291
Query 1124 TTAAATGGCTCGGTTCGAAGAAATCATGGAGGAAAAACGCCGGGAAAGATCATGTTTTTG 1183
||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 2292 TTAAATGGCTCGGATCGAAGAAATCATGGAGGAAAAACTCCGGAAAAGATCATGTTTTTG 2351
Query 1184 TTCTTGGAAAGATCTCTTGGGATTTTAGGAGGAATGATAAGTTTTCGTGGGGCTCAAGTT 1243
|||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
Sbjct 2352 TTCTCGGAAAGATCTCTTGGGATTTTAGGAGGGTTGATAAGTATTCTTGGGGCTCAAGCT 2411
Query 1244 TACTTGAGATGCAAGAAATGAAAAACCCTACAAAACTCCTCATCGAACGTAATCCATGGG 1303
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2412 TACTTGAGATGCAAGAAATGAAAAACCCTACAAAGCTTCTCATCGAACGTAATCCATGGG 2471
Query 1304 ATGTCAACGACATCGCGATACCTCATCCGACATACTTCCACCCGAAAACAGACAACGATA 1363
| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 2472 AAGTCAACGACATCGCGATACCTCATCCCACATACTTCCACCCGAAAACTGACACCGATA 2531
Query 1364 TCGCCATCTGGC 1375
||||||| ||||
Sbjct 2532 TCGCCATATGGC 2543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5